Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05091 ATGAACATTGAGAAAATGACTCAACAGAATGTGGTAGTGTCGGAGACGAAAACCGGAATCAACGGCGGTAATAGTAGTATTACCGTGGCACAGAAGCCACCGGCGGCACCCGGTGGTTACATTCCCATTCCGAGAAGGAGAATTTTGAAGAACCTTGAAATCAATGGAGGACAGAGAATCAATATTTCCATTGATTCCATGAGAGCTTCTTCTCCAACTCATGCAAAATCAACTCCTTCTCTAGCTGAAGAATATAATTCTTGGATTCTTCATCATCCATCTGCATTAGACATGTTTGAGCAGATTATGGATGCTGCTAAGGGGAAACAAGTTGTCATGTTTTTGGACTATGATGGTACTTTGTCACCCATCGTCGACGATCCCGACCGCGCTTTCATGTCGGATTCGATGAGAAAAACAGTTAGGAAACTTGCAAGGTGTTTTCCTACTGCAATTGTTACTGGAAGATGCATTGACAAAGTGTACAATTTTATCCGATTGGCTGAACTATATTATGCTGGAAGCCATGGAATGGATATTAAAGGGCCAACAAAAGAGTCTAATTCCAACAAAAATGACAAAGCAGAGGAAATTCTTTTTCAACCTGCTAGTGAATTTGTTCCTATGATAAATGAGGTGTTTGAACAATTAGTTGAGAAAACAAAATCAACTCCTGGTGCTAGAGTTGAGAATCATAAGTTCTGTGCCGCTGTTCATTTTAGATGTGTTGAGGAAAAGAGATGGATTGAATTAGCACAGCAAGTAAAATCAGTGTTAAAGGAGTATCCAAAACTTCGTCTTGCACAAGGAAGAAAGGTATTCGAGATTCGTCCCTCAATTAAATGGGACAAGGGCAAGGCTTTAGAATTTTTGTTAGAGTCACTTGGATTTGCCAACTGTAACGATGTGTTTCCTGTTTATATTGGTGATGATAGAACCGATGAAGATGCATTCAAGAAACTAAGAGACAGAGGACAAGGTTTTGGAATTCTGGTCTCTAAATTTCCTAAAGAAACTACTGCTTCTTACACTCTACAGGAACCCAATGAGGTTATGGATTTTCTGCAGCGTTTGGTGGAGTGGAAAAAATTATCTACAAAATCACGTTCTAGGGTGTAG 1119 0.3977 MNIEKMTQQNVVVSETKTGINGGNSSITVAQKPPAAPGGYIPIPRRRILKNLEINGGQRINISIDSMRASSPTHAKSTPSLAEEYNSWILHHPSALDMFEQIMDAAKGKQVVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCIDKVYNFIRLAELYYAGSHGMDIKGPTKESNSNKNDKAEEILFQPASEFVPMINEVFEQLVEKTKSTPGARVENHKFCAAVHFRCVEEKRWIELAQQVKSVLKEYPKLRLAQGRKVFEIRPSIKWDKGKALEFLLESLGFANCNDVFPVYIGDDRTDEDAFKKLRDRGQGFGILVSKFPKETTASYTLQEPNEVMDFLQRLVEWKKLSTKSRSRV 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05091 372 NCBIfam HAD-IIB family hydrolase 113 324 IPR006379 -
Vivi5g05091 372 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 41 368 IPR044651 GO:0004805|GO:0005992
Vivi5g05091 372 Gene3D - 208 371 IPR023214 -
Vivi5g05091 372 Gene3D - 111 204 IPR023214 -
Vivi5g05091 372 NCBIfam trehalose-phosphatase 109 359 IPR003337 GO:0003824|GO:0005992
Vivi5g05091 372 SUPERFAMILY HAD-like 112 361 IPR036412 -
Vivi5g05091 372 CDD HAD_TPP 112 352 - -
Vivi5g05091 372 FunFam Trehalose 6-phosphate phosphatase 203 279 - -
Vivi5g05091 372 FunFam Trehalose 6-phosphate phosphatase 111 198 - -
Vivi5g05091 372 Pfam Trehalose-phosphatase 114 348 IPR003337 GO:0003824|GO:0005992
Vivi5g05091 372 FunFam Trehalose 6-phosphate phosphatase 209 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05091 Vivi-Chr5 151709207 151712383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05091 113 321 Trehalose Biosynthesis Gene Families AT1G23870 25.455 6.17e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05091 K01087 - gmx:100794430 612.453