Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05090 ATGACTCAACAGAATGTGGTAGTGTCGGAGACGAAAACCGGAATCAACGGCGGTAATAGTAGTATTACCGTGGCACAGAAGCCACCGGCGGCACCCGGTGGTTACATTCCCATTCCGAGAAGGAGAATTTTGAAGAACCTTGAAATCAATGGAGGACAGAGAATCAATATTTCCATTGATTCCATGAGAGCTTCTTCTCCAACTCATGCAAAATCAACTCCTTCTCTAGCTGAAGAATATAATTCTTGGATTCTTCATCATCCATCTGCATTAGACATGTTTGAGCAGATTATGGATGCTGCTAAGGGGAAACAAGTTGTCATGTTTTTGGACTATGATGGTACTTTGTCACCCATCGTCGACGATCCCGACCGCGCTTTCATGTCGGATTCGATGAGAAAAACAGTTAGGAAACTTGCAAGGTGTTTTCCTACTGCAATTGTTACTGGAAGATGCATTGACAAAGTGTACAATTTTATCCGATTGGCTGAACTATATTATGCTGGAAGCCATGGAATGGATATTAAAGGGCCAACAAAAGAGTCTAATTCCAACAAAAATGACAAAGCAGAGGAAATTCTTTTTCAACCTGCTAGTGAATTTGTTCCTATGATAAATGAGGTGTTTGAACAATTAGTTGAGAAAACAAAATCAACTCCTGGTGCTAGAGTTGAGAATCATAAGTTCTGTGCCGCTGTTCATTTTAGATGTGTTGAGGAAAAGAGATGGATTGAATTAGCACAGCAAGTAAAATCAGTGTTAAAGGAGTATCCAAAACTTCGTCTTGCACAAGGAAGAAAGGTATTCGAGATTCGTCCCTCAATTAAATGGGACAAGGGCAAGGCTTTAGAATTTTTGTTAGAGTCACTTGGATTTGCCAACTGTAACGATGTGTTTCCTGTTTATATTGGTGATGATAGAACCGATGAAGATGCATTCAAGAAACTAAGAGACAGAGGACAAGGTTTTGGAATTCTGGTCTCTAAATTTCCTAAAGAAACTACTGCTTCTTACACTCTACAGGAACCCAATGAGGTTATGGATTTTCTGCAGCGTTTGGTGGAGTGGAAAAAATTATCTACAAAATCACGTTCTAGGGTGTAG 1104 0.3995 MTQQNVVVSETKTGINGGNSSITVAQKPPAAPGGYIPIPRRRILKNLEINGGQRINISIDSMRASSPTHAKSTPSLAEEYNSWILHHPSALDMFEQIMDAAKGKQVVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCIDKVYNFIRLAELYYAGSHGMDIKGPTKESNSNKNDKAEEILFQPASEFVPMINEVFEQLVEKTKSTPGARVENHKFCAAVHFRCVEEKRWIELAQQVKSVLKEYPKLRLAQGRKVFEIRPSIKWDKGKALEFLLESLGFANCNDVFPVYIGDDRTDEDAFKKLRDRGQGFGILVSKFPKETTASYTLQEPNEVMDFLQRLVEWKKLSTKSRSRV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05090 367 FunFam Trehalose 6-phosphate phosphatase 204 363 - -
Vivi5g05090 367 NCBIfam trehalose-phosphatase 104 354 IPR003337 GO:0003824|GO:0005992
Vivi5g05090 367 CDD HAD_TPP 107 347 - -
Vivi5g05090 367 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 36 363 IPR044651 GO:0004805|GO:0005992
Vivi5g05090 367 Gene3D - 106 203 IPR023214 -
Vivi5g05090 367 Gene3D - 204 366 IPR023214 -
Vivi5g05090 367 NCBIfam HAD-IIB family hydrolase 108 319 IPR006379 -
Vivi5g05090 367 SUPERFAMILY HAD-like 107 356 IPR036412 -
Vivi5g05090 367 Pfam Trehalose-phosphatase 109 343 IPR003337 GO:0003824|GO:0005992
Vivi5g05090 367 FunFam Trehalose 6-phosphate phosphatase 198 274 - -
Vivi5g05090 367 FunFam Trehalose 6-phosphate phosphatase 106 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05090 Vivi-Chr5 151709177 151712383 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05090 108 316 Trehalose Biosynthesis Gene Families AT1G23870 25.455 5.19e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05090 K01087 - gmx:100794430 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05090 5 151709177 151712383 Vivi5g05090 5 151709177 151712383 ECH