Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05088 ATGTTAACAACCATAGATATATACAATGAAGAACTGATGAAAGCACTAGAGCCTTTTATGAAAACTGGCTCTTCTTCATTAGTCTCTGAACAACAATCACACAATTTGAATCCCAATTATGAAACTCAAAGAAGCTCTATTGGTCTCAACCAACTCACCCCATCACAAATCCTTCAAATCCAAACCCAATTCCAAATCACCCAACAGCAACAACAAAAAAGTACTCTCACTCTCACACAAAAGCCCGTTCCCATGAAGCACTTTGGAACTCCTTCAAAACCCACGAAACTCTATCGTGGAGTTAGACAGCGTCATTGGGGAAAATGGGTAGCTGAAATAAGACTCCCAAAGAATCGTACTCGTCTTTGGCTTGGAACCTTCGATACTGCAGAAGAAGCAGCTTTTGCTTATGATAACGCAGCTTATAAGCTTAGAGGCGAATTCGCACGCCTCAATTTTCCAAACATGTGCCACTATGGAAATTACAATCCTCTCGCTTCCTCGGTTGATTCTAAGCTTCAAGCTATTTGTGAATCCTTAGCGGTTTCTCAGAAACAAGGGAACACTGAAAAGCCATGCATCTCTGTTGATGATGTTAAGCCGGTTGTTTTTGTTCCTGAACAACAACCGAAGTATGAATTGGTTTTTCACGAGTTTGAGGATTTTAAGGTTGAGAATGAGAAGAATACAGTGTTGTTGTCTATGTCTGATGAATGTTCACCTGGTTTGTCTTCACCAGAATCAGGTGTTAGTTTCTTGGATTTTTCGGATTCTTGTCGGTGGGATGAAGTGGAGAATTTTGGGTTGAAGAAGTACCCTTCTGTTGAGATTGATTGGGAAGCATTATGA 849 0.4052 MLTTIDIYNEELMKALEPFMKTGSSSLVSEQQSHNLNPNYETQRSSIGLNQLTPSQILQIQTQFQITQQQQQKSTLTLTQKPVPMKHFGTPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAFAYDNAAYKLRGEFARLNFPNMCHYGNYNPLASSVDSKLQAICESLAVSQKQGNTEKPCISVDDVKPVVFVPEQQPKYELVFHEFEDFKVENEKNTVLLSMSDECSPGLSSPESGVSFLDFSDSCRWDEVENFGLKKYPSVEIDWEAL 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05088 282 CDD AP2 96 155 IPR001471 GO:0003700|GO:0006355
Vivi5g05088 282 ProSiteProfiles AP2/ERF domain profile. 97 154 IPR001471 GO:0003700|GO:0006355
Vivi5g05088 282 SMART rav1_2 97 160 IPR001471 GO:0003700|GO:0006355
Vivi5g05088 282 FunFam Ethylene-responsive transcription factor 2 96 155 - -
Vivi5g05088 282 SUPERFAMILY DNA-binding domain 97 155 IPR016177 GO:0003677
Vivi5g05088 282 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 11 282 - -
Vivi5g05088 282 Pfam AP2 domain 98 147 IPR001471 GO:0003700|GO:0006355
Vivi5g05088 282 Gene3D AP2/ERF domain 97 156 IPR036955 GO:0003700|GO:0006355
Vivi5g05088 282 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Vivi5g05088 282 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05088 Vivi-Chr5 151624565 151625974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05088 2 282 AP2-EREBP Transcription Factor Family AT4G39780 51.178 1.53e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi5g05088 AP2 8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05088 K09286 - gmx:100797648 284.263