Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05065 ATGGGATTGAGAGATCGTAGTAGCAGCATGGAGGATCCAGATGGGACATTGGCTAGTGTTGCCCAATGCATTGAGCAGCTGCGCCAGAGCTCGTCATCTGTGCATGAGAAAGAGTATTCCTTAAGGCAGTTATTGGATCTTATAGATATGCGTGAAAATGCCTTTAGTGCTGTTGGATCTCACTCCCAGGCAGTTCCAGTGCTTGTTTCCCTTCTCCGGTCAGGTTCGTTGAATGTGAAGATCCAGGCAGCAACTGTTTTGGGATCACTTTGTAAAGAAAATGAACTGAGGGTGAAGGTCTTGCTTGGAGGCTGTATTCCTCCATTGCTTGGTCTCCTGAAATCCAGTTCTACTGAAGGGCGAATTGCCGCTGCAAAGACTATATATGCTGTCTCTCAAGGTGGCGCAAAAGATCACGTTGGTTCCAAAATATTTTCAACTGAAGGAGTAGTACCCGTGCTTTGGGAGCAGTTGCGAGCTGGCCTGAAAATCGAAAATGTAGTTGAAAGTTTATTGACAGGAACATTGAAAAATCTCTCCAGCAGTGCTGAGGGATTCTGGAGCTCAACAGTTCAATCTGGAGGAGTGGACATATTAGTGAAGTTATTGGCAACAGGGCAGCCTAGCTCTTTAGCCAGTGTTTGCTTTTTACTTGCTTCTGTAATGATGGAGGATGCATCGGTTTGTTCGAAGGTGTTGAGTGCAGAGGTGACTAAACAACTTTTGAAACTGTTAGGCCCCGGTAATGATGACCTTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTTCTCAGTGCAAAGAGGCGAGGCGGGAGATAGCCAGTTCTAATGGCATTCCTGCTCTGATCAATGCTACCATAGCTCCTTCGAAAGAATTCATGCAGGGTGAGTGTGCTCAAGCATTACAAGAGAATGCTATGTGTGCTTTAGCAAATATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTTGGTCAAAGCCTCGAGTCATGCTCTTCTCCAACACAAATTGCCGACACTTTAGGAGCTATAGCATCAGCTCTTATGATATATGATAACAAGGCCGAATCTACCAAACCATCAAACCCTTTGGTGGTTGAAGAGACGTTACTCAAACAATTCAAACCTCGGTTGCCTTTCCTTGTGCTAGAACGGACCATTGAGGCTCTAGCTAGTTTATACGGTAATTCTGTACTCTCAACTAAACTAGCAAATTCCGATGCAAAACATTTGCTTGTTGGTTTGATAACAATGGCTGCCAATGAAGTGCAAGATGAGCTTATAAAAGCTCTGTTGACACTGTGCAAAAGTGAAGGCAGTCTATGGCGGGCACTTCAGGGTCGTGAAGGAGTTCAACTATTGATATCTCTTCTCGGCCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCATTGCTTTGCCTTTTATCTAATGAAAATGATGAAAGTAAATGGGCAATTACTGCTGCTGGTGGTATACCTCCGCTTGTTCAAATTTTGGAGACAGGATCTGCAAAAGCAAAGGAAGATTCGGCAAGAATCCTTAAGAATTTGTGCAATCATAGTGAAGATATACGTGCTTGTGTTGAAAGTGCAGATGCTGTTCCTGCATTGTTGTGGCTATTGAAAAACGGAAGTCCTAATGGGAAGGATATTGCAGCAAAGACCATAAATCATTTAATTCATAAATCTGATACTACAACTATCAGTCAGCTTACAGCATTATTGACTAGCGATCTTCCTGATTCTAAAGTATATATTTTGGATGCTCTGAGAAGTATGCTTTGTGTTGCTCCTCTTAGCGACATTTTACGTGAAGGTAGTGCCGCCGGTGATGCATTTGACACTGTGATAATGTTATTGAGCTCTAACAAAGAAGAAACTCAGGCAAAATCTGCATCAGTTCTGGCTGAAATTTTCGAAGCAAGGAAAGATTTGCGTGAAAGTAGTGTTGCTGTCAGAACTCTTTGTTCAGCCATGAAATTGCTCAATGTTGAATCCGAAAGTATCCTAATGGAGTCCTCAAACTGCCTGGCTTCAATATTTCTTTCCATTAAAGAGAACAAAGATGTAGCAGCTCTTGCTAGAGATACATTGACCACCCTAGTTGCTCTAGCTAACTCTTCAGTTTTGGAAGTGGCAGAGATGGCTATAGGTGCTGTAGCGAATCTTATTTTGGATACTGAAATAGCAAAGAAAGTTGTTCTAGAAGAAGTTATCCTGCCTGCCACCAGAGTATTACGTGAAGGCACAAATTCTGGAAAAACTCGTGCTGCAGCAGCTATCGCTCGCCTCTTACATTCTCAGAAAGTTGATAATGCTGTCACTGATTGTGTGAATCGCACCGGCACTGTTCTTGCATTAGTTTCCTTTTTGGACTCTTCTGTCAACGAATCTGTTTCCACATCAGAGGCTCTAGAAGCACTTGCCATTCTTTCCAGGTCAGAAGAGACTGGTGCAAATATTAAACCAGCATGTGCAGTTTTAGCTGAATTCCCTCAAAGCATAATCCCAATAGTACTGTGCATTGTTAATTCAACACCGACATTGCAAGATAAAACAATCGAGATTTTATCTCGATTGTGTAAAGATCAGCCTGTTATTTTAGGAGATACTGTTGCATCTGCCTCTGGATGTATATCTTCAATAGCTAAGAGGGTAATTAATTCCTCAAATGTAAAAGTCAAAATTGGTGGAGTTGCGCTTCTTATTTGTGCTGCAAAACTAAATCATCAGAGACTGGTGGAGAATATCAATATATCAAACTTGTCTGCTAACCTTATTCAGTCTCTAGTTGATATCCTTATCTCTGCACAGTCTTCTTTTGGTAATCATGGTGAAGATGATGACAAGGAATCCATCAGCATATGCAGGCGTACACAAGAAGAGGCCAACGTCCGGGAATCCAACACTGGAACTTCCATTATATATGGTGTTGACTTAGCTATATGGTTGCTATCTATTCTTGCTTGTCATGATGAAAGAAATAAAGCTGCTATAATGAAGGCTGGAGCAATTGATGTTCTTGCCGACAAGATCTCAAATTGTTACTCACAGTATTCTCAGACTGAATACAAAGAAGATAGCAGCATGTGGATTTGTGCCTTGTTGTTGGCAATATTATTTCAAGACAGAGATATCATACGGGCACATTCAACCATAAAGTCTTTACCGGCACTTGCCAATTTATTGAAGTCAGATGAATCGGCGAACAAATATTTTGCTGCACAATCAATAGCGAGCCTTGTTTGCAATGGTAGCAGGGGAACACTTCTGTCTGTGGCGAATTCTGGGGCAGCAGGCGGACTTATCTCTTTGCTTGGCCGTGCTGATACTGATATGCAGGATCTTCTGGAATTGTCAGAGGAATTTGCTTTGGTGCGTTATCCTGATCAAGTGGCTCTAGAGAGGTTGTTTAGAGTTGATGATATAAGAGTTGGTGCTACTTCTCGAAAGGCAATTCCTGCCCTAGTTGATCTTCTCAAACCAATTCCGGGTCGCCCAGGGGCACCATTTTTAGCTCTCGGGATTTTGACTCAGCTTGGCAGAGATTGTCCGTCAAACAAGACTTTAATGGTAGAATCTGGGGCTTTAGAGGCTCTTACAAAGTATCTTTCCCTTGGTCCACAAGACGCAACCGAAGAAGCTGCTACAGATCTGCTAGGAATTCTCTTTAGTAGTGCTGATATACGAAAACATGACTCTGCATTTGGCGCTGTTAACCAACTTATAGCTGTCCTACGTTTAGGAGGAAGAGCTGCAAGGTTTAGTGCTGCAAAAGCATTGGAAAGTTTATTTTCTGCTGACCACATTAGAAATGCTGAGATTGCTCGACAAGCTATTCAACCCTTGGTAGAAATTCTTAACACTGGTTCAGAAAGGGAGCAGCATGCTGCAATTGCTGCATTGATTGGGTTACTGAGTGAAAACCCATCTAAAGCACTTGCTGTTGCAGATGTTGAAATGAATGCAGTGGATGTTCTTTATAGGATCCTTTCGTCGAATTGTTCAATTGACCTGATAGGGGATGCTGCTGAGTTATGTTGTGCTCTTTTTGGAAATACAAGGATTCGGTCCACAACGGCTGCTACACGATGTGTTGAACCACTAGTCTCTCTCCTTGCAACCGAGTTCAGTCCTGCTCATCATTCAGTTGTTCGGGCACTGGATAGGCTTGTTGATGATGAGCAACTGGCTGAATTAGTTGCCACACACAGTGCAGTTGTCCCTCTTGTTAGTCTACTGTCTGGTAGAAACTTTGTACTTCACGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGACCTGCTTGTAAAATGGAAATGGTAAAAGCTGGAGTCATTGAAAGCATACTGGACATCTTACACGAAGCACCTGATTTTTTGTGTGCAGCTTTTGCAGAACTATTGCGTATATTAACAAATAATGCTACCATAGCTAAAGGACCATTGGCTGCCAAAGTTGTTGAACCCTTGTTTTTGTTGTTGGCAAGGCACGATTTTGCGCCCGACGGACAGCACAGTGCAATGCAGGTTTTGGTTAATATCGTAGAACATCCACAGTGCCGTGCTGACCATTCATTGACTTCTCGCAAAGCTATTGAACCACTTATCCCTTTGCTTGATTCACCGATATCAGTAGTGCAACAGTTGGCTGCTGAGCTGCTTTCACATCTGCTCCTAGAAGAACACTTTCAGAAGGATCCAGTGACACCGAAAGTAATTGCCCCTCTAATAAGAATTCTCAGTTCTGGTATACCTTTATTGCAGCAGAGAGCTGTAAAGGCGCTAGTTAGTATCGCACTGACATGGCCAAACGAAATTGCCAAAGAGGGTGGTGTTGTTGAGATTTCCAAAGTGATATTGCAAGCTGATCCTTCGCTTCCACATGCTTTATGGGAATCCGCTGCGTCTGTTTTGTCAAGTATTCTGCAATTTAGCTCAGAATTCTACTTGGAAGTGCCCGTTGCTGTGTTGGTAAAGTTGCTTCGATCTGGCTCAGAGAGCACAGTTATTGGTGCGTTAAATGCGCTTCTGGTTTTGGAAAGTGATGATGGAACTAGTGCAGAATCTATGGCCGAAAGTGGTGCAATAGAGGCTCTCTTGGAGCTCCTAAGAGCACACCAGTGTGAGGAAATCGCTGCACGACTCTTAGAAGTATTGCTGAACAACGTTAAGATCAGAGAAACGAAAGTTACTAAATCAGCCATCTTACCGTTATCACAGTATCTCTTGGACCCGCAAACCCAAGCACAACACGCAAGGTTATTGGCAACTTTGGCCCTTGGGGATTTGTTCCAGAACGAGGCTCTTGCTCGAACAGGTGATGCGGTTTCTGCTTGTCGTGCTTTAGTGAACGTTCTTGAAGACCAACCGACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAAAATCTTGTGATGTACAATCGATCAAATAGAAGAGCGGTTGCAGAGGCCGGTGGTGTTCAGGTTGTATTGGATCTGATAGGTTCAAGTAATCCTGAGACTTCTGTTCAGGCTGCAATGTTTATTAAACTTCTGTTCTCAAATAATACTATTCAAGAGTATGCTTCTAGCGAAACTGTTAGAGCAATCACTGCTACTATTGAAAAAGATTTATGGGCGAGTGGAACTGTGAACGAAGAATATCTGAAAGCATTAAATTCTTTATTTAGCAACTTTCCACGACTGAGAGCAACTGAACCGGCAACACTTAGCATTCCCCATCTGGTAACATCTTTAAAGACAGGTTCAGAGGCTTGTCAGGAAGCTGCATTGGATGCACTTTTCCTGCTCAGACAAGCTTGGTCAGCATGCCCTGCCGAAGTATCAAGAGCTCAGTCAATTGCAGCTGCAGATGCTATTCCCTTCTTGCAATACTTAATTCAGTCTGGCCCGCCTCGGTTTCAGGAGAAGGCAGAATTTTTATTACAGTGTTTGCCAGGGACATTGGTGGTGATTGTCAAGCGTGGTAACAATATGAAACAGTCTGTTGGAGTCCCTAGTGTTTACTGCAAGATTACACTCGGCCATAATCCGCCAAGGCTAACCAAGGTGGTCTCAACGGGCCCTAATCCGGAGTGGGACGAGAGCTTTACATGGTCTTTTGAGAGTCCTCCAAAAGGCCAAAAACTTCATATTTCTTGCAAAAACAAGAGCAAAGTGGGAAAGAGTAAATTTGGGAAAGTAACAATCCAAATTGATCGAGTGGTAATGCTCGGAGCCGTAGCTGGCGAATACACTCTGTTGCCTGCAAGTAAAAGTGGACCACCAAGGAATCTAGAAATTGAGTTTCAATGGTCTAATAAAGCAAGTGATACAACAACTGATACAAATCAGCAGCCTTAG 6366 0.4301 MGLRDRSSSMEDPDGTLASVAQCIEQLRQSSSSVHEKEYSLRQLLDLIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSTEGRIAAAKTIYAVSQGGAKDHVGSKIFSTEGVVPVLWEQLRAGLKIENVVESLLTGTLKNLSSSAEGFWSSTVQSGGVDILVKLLATGQPSSLASVCFLLASVMMEDASVCSKVLSAEVTKQLLKLLGPGNDDLVRAEAAGALKSLSSQCKEARREIASSNGIPALINATIAPSKEFMQGECAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQIADTLGAIASALMIYDNKAESTKPSNPLVVEETLLKQFKPRLPFLVLERTIEALASLYGNSVLSTKLANSDAKHLLVGLITMAANEVQDELIKALLTLCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAKEDSARILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTINHLIHKSDTTTISQLTALLTSDLPDSKVYILDALRSMLCVAPLSDILREGSAAGDAFDTVIMLLSSNKEETQAKSASVLAEIFEARKDLRESSVAVRTLCSAMKLLNVESESILMESSNCLASIFLSIKENKDVAALARDTLTTLVALANSSVLEVAEMAIGAVANLILDTEIAKKVVLEEVILPATRVLREGTNSGKTRAAAAIARLLHSQKVDNAVTDCVNRTGTVLALVSFLDSSVNESVSTSEALEALAILSRSEETGANIKPACAVLAEFPQSIIPIVLCIVNSTPTLQDKTIEILSRLCKDQPVILGDTVASASGCISSIAKRVINSSNVKVKIGGVALLICAAKLNHQRLVENINISNLSANLIQSLVDILISAQSSFGNHGEDDDKESISICRRTQEEANVRESNTGTSIIYGVDLAIWLLSILACHDERNKAAIMKAGAIDVLADKISNCYSQYSQTEYKEDSSMWICALLLAILFQDRDIIRAHSTIKSLPALANLLKSDESANKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGRADTDMQDLLELSEEFALVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPGRPGAPFLALGILTQLGRDCPSNKTLMVESGALEALTKYLSLGPQDATEEAATDLLGILFSSADIRKHDSAFGAVNQLIAVLRLGGRAARFSAAKALESLFSADHIRNAEIARQAIQPLVEILNTGSEREQHAAIAALIGLLSENPSKALAVADVEMNAVDVLYRILSSNCSIDLIGDAAELCCALFGNTRIRSTTAATRCVEPLVSLLATEFSPAHHSVVRALDRLVDDEQLAELVATHSAVVPLVSLLSGRNFVLHEAISRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDFLCAAFAELLRILTNNATIAKGPLAAKVVEPLFLLLARHDFAPDGQHSAMQVLVNIVEHPQCRADHSLTSRKAIEPLIPLLDSPISVVQQLAAELLSHLLLEEHFQKDPVTPKVIAPLIRILSSGIPLLQQRAVKALVSIALTWPNEIAKEGGVVEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVKLLRSGSESTVIGALNALLVLESDDGTSAESMAESGAIEALLELLRAHQCEEIAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQHARLLATLALGDLFQNEALARTGDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYNRSNRRAVAEAGGVQVVLDLIGSSNPETSVQAAMFIKLLFSNNTIQEYASSETVRAITATIEKDLWASGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPFLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIVKRGNNMKQSVGVPSVYCKITLGHNPPRLTKVVSTGPNPEWDESFTWSFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGAVAGEYTLLPASKSGPPRNLEIEFQWSNKASDTTTDTNQQP 2121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05065 2121 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1987 2106 IPR035892 -
Vivi5g05065 2121 Gene3D - 386 651 IPR011989 -
Vivi5g05065 2121 SUPERFAMILY ARM repeat 1144 1526 IPR016024 -
Vivi5g05065 2121 ProSiteProfiles C2 domain profile. 1969 2086 IPR000008 -
Vivi5g05065 2121 SUPERFAMILY ARM repeat 14 646 IPR016024 -
Vivi5g05065 2121 Gene3D - 980 1323 IPR011989 -
Vivi5g05065 2121 SUPERFAMILY ARM repeat 618 1021 IPR016024 -
Vivi5g05065 2121 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 493 535 IPR000225 GO:0005515
Vivi5g05065 2121 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 3 2109 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vivi5g05065 2121 SUPERFAMILY ARM repeat 983 1115 IPR016024 -
Vivi5g05065 2121 Gene3D - 1640 1752 IPR011989 -
Vivi5g05065 2121 SMART C2_3c 1989 2085 IPR000008 -
Vivi5g05065 2121 SUPERFAMILY ARM repeat 1538 1984 IPR016024 -
Vivi5g05065 2121 SMART arm_5 1815 1855 IPR000225 GO:0005515
Vivi5g05065 2121 SMART arm_5 1397 1437 IPR000225 GO:0005515
Vivi5g05065 2121 SMART arm_5 482 522 IPR000225 GO:0005515
Vivi5g05065 2121 SMART arm_5 690 728 IPR000225 GO:0005515
Vivi5g05065 2121 SMART arm_5 225 266 IPR000225 GO:0005515
Vivi5g05065 2121 SMART arm_5 1356 1396 IPR000225 GO:0005515
Vivi5g05065 2121 SMART arm_5 1270 1310 IPR000225 GO:0005515
Vivi5g05065 2121 SMART arm_5 93 133 IPR000225 GO:0005515
Vivi5g05065 2121 SMART arm_5 774 816 IPR000225 GO:0005515
Vivi5g05065 2121 SMART arm_5 51 92 IPR000225 GO:0005515
Vivi5g05065 2121 SMART arm_5 1439 1479 IPR000225 GO:0005515
Vivi5g05065 2121 SMART arm_5 1187 1228 IPR000225 GO:0005515
Vivi5g05065 2121 SMART arm_5 1688 1730 IPR000225 GO:0005515
Vivi5g05065 2121 SMART arm_5 268 317 IPR000225 GO:0005515
Vivi5g05065 2121 SMART arm_5 524 564 IPR000225 GO:0005515
Vivi5g05065 2121 SMART arm_5 1527 1565 IPR000225 GO:0005515
Vivi5g05065 2121 Pfam Armadillo/beta-catenin-like repeat 482 521 IPR000225 GO:0005515
Vivi5g05065 2121 Pfam Armadillo/beta-catenin-like repeat 61 91 IPR000225 GO:0005515
Vivi5g05065 2121 Coils Coil 254 274 - -
Vivi5g05065 2121 Gene3D - 686 943 IPR011989 -
Vivi5g05065 2121 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1338 1572 - -
Vivi5g05065 2121 Pfam C2 domain 1988 2079 IPR000008 -
Vivi5g05065 2121 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1988 2109 - -
Vivi5g05065 2121 MobiDBLite consensus disorder prediction 2104 2121 - -
Vivi5g05065 2121 Gene3D - 1753 1986 IPR011989 -
Vivi5g05065 2121 Gene3D - 1324 1618 IPR011989 -
Vivi5g05065 2121 Gene3D - 8 377 IPR011989 -
Vivi5g05065 2121 Gene3D C2 domain 1987 2118 IPR035892 -
Vivi5g05065 2121 CDD C2 1990 2080 - -
Vivi5g05065 2121 MobiDBLite consensus disorder prediction 2094 2121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05065 Vivi-Chr5 151358172 151368010 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05065 445 577 U-box Gene Family AT2G23140 39.259 1.04e-10 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05065 - - cam:101494820 3681.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05065 5 151358172 151368010 Vivi5g05065 5 151358172 151368010 ECH
Vivi5g05065 5 151358172 151368010 Vivi3g03127 3 53074339 53084352 PCT