Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05058 ATGACAATTCTCTCTGAGCTCTTATACCAGCTATATGTCAAAACAATAGTCCTATTCACATACATGCTAATAGAACTCATCCTCATCATTTGTTACCTCAAGTCTACAAAAAACCCAATCACCACAACCCAATACCTCAGTTTCATCGAAGAGAAGAACCCAACAAGAAGACTGAAGAAGGCTACAACAGACCATATAGATTGCAGGGTTTGTTTATCAGAGTTCAAGGAAGGAGACACTGTGAGAAACTTGAATTGCGAACACACCTTTCATAAGGATTGTTTGGATGAGTGGTTCTTGCAAGACCAATATTGTGCTACTTGTCCACTTTGTAGGTACAAGGTTTTGTCAGATGATGTTTCTTCTAAGTATTGTTTGCTTCAAAATCAGGTGGAGTTTGATGGGATTGATGATCAGTTTTTGGGTTTGTTATCTTCATTAAGAGGTAGTGGTGATATTTGGTATAGATATCTATGA 477 0.3753 MTILSELLYQLYVKTIVLFTYMLIELILIICYLKSTKNPITTTQYLSFIEEKNPTRRLKKATTDHIDCRVCLSEFKEGDTVRNLNCEHTFHKDCLDEWFLQDQYCATCPLCRYKVLSDDVSSKYCLLQNQVEFDGIDDQFLGLLSSLRGSGDIWYRYL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05058 158 Pfam Ring finger domain 67 112 IPR001841 -
Vivi5g05058 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 117 IPR013083 -
Vivi5g05058 158 SMART ring_2 68 111 IPR001841 -
Vivi5g05058 158 SUPERFAMILY RING/U-box 48 118 - -
Vivi5g05058 158 ProSiteProfiles Zinc finger RING-type profile. 68 112 IPR001841 -
Vivi5g05058 158 PANTHER - 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05058 Vivi-Chr5 151307280 151307756 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05058 67 123 C3H Transcription Factor Family AT1G15100 56.140 3.65e-16 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05058 5 151307280 151307756 Vivi5g05058 5 151307280 151307756 ECH