Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05052 ATGCAGATGCAAAGACGTCTCGCGCAAAATCGAGAGGCTGCCCGTAAGAGTCGTTTGAAGAAAAAGGCTCATATTCAACAGTTAGAATCGTGTCGCTTGAAGCTGATGCAGGTAGAGCAAGAGCTAGATCTTACTAGACAACAGGGATTGTATATAGGTGGTGGATTGGATTCTAATCATTCGGGTTTTGCTGGTTCTGCGAATTCAGAAATAGCAACTTTTAAGACGAAGTACGAACACTGGGTGGAAGAACAAAACAGACAAGTTTTGGAATTAAAAAATGCTTTAAGTGCTCATATCAGTGACATAGAGATTGGGGAACTTGTAAATGGCATCATGAATCACTATTTCAAACTCTTTTGCATGAAGTCTGATGCTGCAAAAGTAGATGTTTTCTATGTTATCACCGGCATGTGGAAAACAACGGCTGAAGGGTTTTTCTTGTGGATTGGAGGTTTTCGTCCCTCTGAGCTTTTAAAGGTTTTGGTCCCTTTGATTGAGCCATTGACAGAGGAACAACGGTTTGATGCGTATAATCTTGAGAAGTCATGCCAGCAAGCAGAAGATGCTCTTTCAAAAGGTATGGAAAAACTCCAGGGAATGCTTGTTGACACAGTTGCAGCAGGAAACTTCGTCGAAGGAATTTACATTCCAGAGATGGCTACTGCAATAGAGAGGTTGGAAGCTCTAGCTAGCTTTGTGAACCAGGCTGATCATCTACGACAGGAAACCTTGCAGCAGATGTGTCGAATACTTACCATACGTCAAACTGCTCGATGGTTGCTTGCTTTGGGTGAATATTTTCAACGCCTAAGGAATTTGAGCAAACTTTGGACCGATCGATCTCGCAAACCTGCTTAG 861 0.4251 MQMQRRLAQNREAARKSRLKKKAHIQQLESCRLKLMQVEQELDLTRQQGLYIGGGLDSNHSGFAGSANSEIATFKTKYEHWVEEQNRQVLELKNALSAHISDIEIGELVNGIMNHYFKLFCMKSDAAKVDVFYVITGMWKTTAEGFFLWIGGFRPSELLKVLVPLIEPLTEEQRFDAYNLEKSCQQAEDALSKGMEKLQGMLVDTVAAGNFVEGIYIPEMATAIERLEALASFVNQADHLRQETLQQMCRILTIRQTARWLLALGEYFQRLRNLSKLWTDRSRKPA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05052 286 SUPERFAMILY Leucine zipper domain 3 32 IPR046347 GO:0003700|GO:0006355
Vivi5g05052 286 ProSiteProfiles DOG1 domain profile. 71 281 IPR025422 GO:0006351|GO:0043565
Vivi5g05052 286 Pfam Seed dormancy control 90 163 IPR025422 GO:0006351|GO:0043565
Vivi5g05052 286 Gene3D - 2 50 - -
Vivi5g05052 286 SMART brlzneu 1 80 IPR004827 GO:0003700|GO:0006355
Vivi5g05052 286 FunFam BZIP family transcription factor 1 50 - -
Vivi5g05052 286 Pfam bZIP transcription factor 2 30 IPR004827 GO:0003700|GO:0006355
Vivi5g05052 286 Coils Coil 21 48 - -
Vivi5g05052 286 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 5 20 IPR004827 GO:0003700|GO:0006355
Vivi5g05052 286 PANTHER TRANSCRIPTION FACTOR TGA9 2 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05052 Vivi-Chr5 151130688 151133201 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05052 2 286 Calmodulin-binding Proteins AT5G10030 66.316 8.79e-139 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi5g05052 DOG1 4.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05052 K14431 - gmx:100808443 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05052 5 151130688 151133201 Vivi5g05052 5 151130688 151133201 ECH
Vivi5g05052 5 151130688 151133201 Vivi3g03112 3 52667255 52670054 PCT