Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05051 ATGGATTCTTCATCTTCCCAATTTGTTTCATCAAGAAACATTGGTGTATATGATCCTATGCATCAATTTAGTATATGGGAAGAACACTTCAAGACTAATGGTGATTTAAGTGCTTCCATGTCCTTAATTGAGGAGGCTAACATGAAGATAAATAATCAGTCAGAGGATGCTTCTTATGGAATTTTAGGAACATCTATCAAGTTTGAGCAAGAAGGTAACAAAATTACTAGTAAGATGCAAAGACGTCTCGCGCAAAATCGAGAGGCTGCCCGTAAGAGTCGTTTGAAGAAAAAGGCTCATATTCAACAGTTAGAATCGTGTCGCTTGAAGCTGATGCAGGTAGAGCAAGAGCTAGATCTTACTAGACAACAGGGATTGTATATAGGTGGTGGATTGGATTCTAATCATTCGGGTTTTGCTGGTTCTGCGAATTCAGAAATAGCAACTTTTAAGACGAAGTACGAACACTGGGTGGAAGAACAAAACAGACAAGTTTTGGAATTAAAAAATGCTTTAAGTGCTCATATCAGTGACATAGAGATTGGGGAACTTGTAAATGGCATCATGAATCACTATTTCAAACTCTTTTGCATGAAGTCTGATGCTGCAAAAGTAGATGTTTTCTATGTTATCACCGGCATGTGGAAAACAACGGCTGAAGGGTTTTTCTTGTGGATTGGAGGTTTTCGTCCCTCTGAGCTTTTAAAGGTTTTGGTCCCTTTGATTGAGCCATTGACAGAGGAACAACGGTTTGATGCGTATAATCTTGAGAAGTCATGCCAGCAAGCAGAAGATGCTCTTTCAAAAGGTATGGAAAAACTCCAGGGAATGCTTGTTGACACAGTTGCAGCAGGAAACTTCGTCGAAGGAATTTACATTCCAGAGATGGCTACTGCAATAGAGAGGTTGGAAGCTCTAGCTAGCTTTGTGAACCAGGCTGATCATCTACGACAGGAAACCTTGCAGCAGATGTGTCGAATACTTACCATACGTCAAACTGCTCGATGGTTGCTTGCTTTGGGTGAATATTTTCAACGCCTAAGGAATTTGAGCAAACTTTGGACCGATCGATCTCGCAAACCTGCTTAG 1089 0.4059 MDSSSSQFVSSRNIGVYDPMHQFSIWEEHFKTNGDLSASMSLIEEANMKINNQSEDASYGILGTSIKFEQEGNKITSKMQRRLAQNREAARKSRLKKKAHIQQLESCRLKLMQVEQELDLTRQQGLYIGGGLDSNHSGFAGSANSEIATFKTKYEHWVEEQNRQVLELKNALSAHISDIEIGELVNGIMNHYFKLFCMKSDAAKVDVFYVITGMWKTTAEGFFLWIGGFRPSELLKVLVPLIEPLTEEQRFDAYNLEKSCQQAEDALSKGMEKLQGMLVDTVAAGNFVEGIYIPEMATAIERLEALASFVNQADHLRQETLQQMCRILTIRQTARWLLALGEYFQRLRNLSKLWTDRSRKPA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05051 362 Pfam Seed dormancy control 166 239 IPR025422 GO:0006351|GO:0043565
Vivi5g05051 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Vivi5g05051 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Vivi5g05051 362 SMART brlzneu 74 156 IPR004827 GO:0003700|GO:0006355
Vivi5g05051 362 Pfam bZIP transcription factor 78 106 IPR004827 GO:0003700|GO:0006355
Vivi5g05051 362 FunFam BZIP family transcription factor 77 126 - -
Vivi5g05051 362 Coils Coil 97 124 - -
Vivi5g05051 362 Gene3D - 77 126 - -
Vivi5g05051 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 118 IPR004827 GO:0003700|GO:0006355
Vivi5g05051 362 SUPERFAMILY Leucine zipper domain 78 108 IPR046347 GO:0003700|GO:0006355
Vivi5g05051 362 PANTHER TRANSCRIPTION FACTOR TGA9 1 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05051 Vivi-Chr5 151130688 151133713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05051 1 361 Calmodulin-binding Proteins AT5G10030 61.157 2.63e-163 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi5g05051 DOG1 6.7e-26 No_clan