Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05048 ATGAAGAAATTAAGATTTAATATAAATTCTTTGCCGATTCCGGGTCGCGGGAAAAAAAACACGTCGAAATCATTTCGGTTTGGAGTGAAGAGGGGATCAGATGGACTAAAACATATTGGAAGATCAATCAAAAGTGGAGTCACTTGGTCAGTTTTTCCGGAAGATCTTAAAGTTTCGCAGAAAAAAGTATTTGATCCTCAAGATAAGAATCTTCTGTATTGGAACAAGTTTTTCGAGATTCTATGCATTCTTTCAATAGCTTGTGATCCATTCTTTTTTTACCTTCCTTATTTCAACCACAAATCGTTTTGCTTAGCAATAGATAACAAGCTCGCGAGTTTTATTATTACATTGAGAACAATATGTGATTGCATTTATCTCATTCGCATAAGTTTTCAATTTCGCACCGCCTTCATTGCACCTTCATCTCGAGTATTTGGAAGAGGCGAACTTGTCATAGATCCTGGATTGATCGCGAAACGATATTTACAACGCTACTTCATTTTTGACTTCTTGTCTGTACTGCCATTCCCACAGGTTATCGTATGGAAATATCTTTATACTACAAGACGTATAGAAGTATTGGATACAAAGACATCGCTTCTGAGAGCTGTCATCATGCAATACTTACCGAGATTTGTACGATTTATACCGTTGGCTTCAGAAGTTAAAAAGACGGCCGGTGTTTTCTCTGAAAATGCATTGCTTGGTGCTATGTACTATTTGATTTGGTATATGCTTGCTAGCCATATTACTGGTTCTGTCTGGTACTTACTAGCCATAGAACGTAACGACACGTGTTGGAAGAATGCTTGTAAGGAGGTTCCAGGATGTAACTCGCATTTTTTGTATTGTGGAAGTACGAGTAAGCATATACGAGGGTACAATCAATGGAGAAATGTCAGTGAATCTGTTCTTAAAAGTAAATGCTTTGTTGAAGATGGTAACTCAGCTTTTAATTATGGAATCTTCTCTCAAGCTATAGAGTCTGATATTGTTGCTTCCATACAAGTCTTCCCTAAATTTTGTTACTGTCTATGGTGGGGACTTCAGAATTTGAGTACACTTGGTCAGGGGCTTCTTACTAGTACTTACCCCGGGGAGGTTATGTTTTCGATAGTAATAGCTATTATGGGGCTTGTTCTTTTTGCTCTTCTCATCGGAAACATGCAGACCTACCTTAACTCTATGTCGGTTCGTCTGGAGGAAATGAGGATCAAAAGGCGTGATTCCGAGCAGTGGATGCATCATCGCTTGCTTCCTTCGGAGCTAAGGGAAAGAGTGAGACGATACGACCAATACAAGTGGTTGAACACGCGTGGAGTAGATGAAGAAAACTTGGTTCAGAGTCTTCCAAAAGATCTCAGAAGAGATATCAAACGTCATCTTTGTTTGAATTTGGTCCGAAGGGTTCCTCTCTTTGCTAACATGGACGAACGCTTGCTTGATGCAATATGCGAGCGATTGAAACCGAGTTTATATACAGAAGCAACCTACATAGTTAGGGAAGGCGATCCAGTTGACGAGATGTTGTTCATCATTCGTGGTCGTCTAGAGAGTGTTACTACGGATGGTGGAAGAAGCGGCTTTTTCAACAGAGGAGTTTTGAAGGAAGGTGATTTCTGTGGTGAAGAGTTGTTAACATGGGCATTGGATCCAAAATCTGCTGCTAACTTGCCATCATCAACTAGAACAGTGAAAGCTATGAGTGAAGTAGAGGCATTTGCTTTAGAAGCGGAGGAGTTAAAGTTTGTCGCATCACAATTTAGACACATACATAGTAGACAGGTTCAACATACCTTCCGTTTCTACTCGCAACAATGGAGAACATGGGCTGCAATCTACATTCAAGCTGCATGGAGGAAGCATTTAAAGAGAAGGCGAAGGAAAGAGGAAGAAGAATACTATGAAGGAATCGATGAATCCACAAAGGCTTTGGTTCCACAAGCCCAAAATTTGTCAAAATTTGGAATTAATACAACAGTCTTTGCTTCTCGCTTTGCTGCTAATCTTCGTGGTTTTAGACGACGAATTCCAAGTTCTAGAGACCTGTTGAGTATCCCGAAACCCCCAGAACCTGACTTTAGTGCTCTCGAGAATGAAGAGTGA 2109 0.4026 MKKLRFNINSLPIPGRGKKNTSKSFRFGVKRGSDGLKHIGRSIKSGVTWSVFPEDLKVSQKKVFDPQDKNLLYWNKFFEILCILSIACDPFFFYLPYFNHKSFCLAIDNKLASFIITLRTICDCIYLIRISFQFRTAFIAPSSRVFGRGELVIDPGLIAKRYLQRYFIFDFLSVLPFPQVIVWKYLYTTRRIEVLDTKTSLLRAVIMQYLPRFVRFIPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLAIERNDTCWKNACKEVPGCNSHFLYCGSTSKHIRGYNQWRNVSESVLKSKCFVEDGNSAFNYGIFSQAIESDIVASIQVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLVLFALLIGNMQTYLNSMSVRLEEMRIKRRDSEQWMHHRLLPSELRERVRRYDQYKWLNTRGVDEENLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEATYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKSAANLPSSTRTVKAMSEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRKHLKRRRRKEEEEYYEGIDESTKALVPQAQNLSKFGINTTVFASRFAANLRGFRRRIPSSRDLLSIPKPPEPDFSALENEE 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05048 702 FunFam Cyclic nucleotide-gated ion channel 1 471 589 - -
Vivi5g05048 702 SUPERFAMILY cAMP-binding domain-like 403 593 IPR018490 -
Vivi5g05048 702 FunFam Cyclic nucleotide-gated ion channel 1 400 464 - -
Vivi5g05048 702 SUPERFAMILY Voltage-gated potassium channels 66 395 - -
Vivi5g05048 702 MobiDBLite consensus disorder prediction 683 702 - -
Vivi5g05048 702 Gene3D - 75 398 - -
Vivi5g05048 702 SMART cnmp_10 473 604 IPR000595 -
Vivi5g05048 702 ProSiteProfiles cAMP/cGMP binding motif profile. 473 603 IPR000595 -
Vivi5g05048 702 ProSiteProfiles IQ motif profile. 609 638 IPR000048 GO:0005515
Vivi5g05048 702 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 55 695 - -
Vivi5g05048 702 Pfam Cyclic nucleotide-binding domain 494 583 IPR000595 -
Vivi5g05048 702 CDD CAP_ED 473 604 IPR000595 -
Vivi5g05048 702 Pfam Ion transport protein 73 400 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi5g05048 702 Gene3D Jelly Rolls 471 591 IPR014710 -
Vivi5g05048 702 Gene3D Helix hairpin bin 400 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05048 Vivi-Chr5 151089121 151092902 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05048 15 697 Ion Channels AT1G15990 68.091 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05048 K05391 - gmx:100810453 1151.73