Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05046 ATGAACACCCACAAACATTCTCGCAATCTCTATGTTATTTTCTTCACAATGTTTGACTCTGGTTACAAGTCACAATATATTGGAGGTCAGAAAGAGAAATTTGTGAGGTTGGATGATTTGGATTCCAATTCGTCGAAGCAATCTAGCTCAAGTGGGATGAAGAAATTAAGATTTAATATAAATTCTTTGCCGATTCCGGGTCGCGGGAAAAAAAACACGTCGAAATCATTTCGGTTTGGAGTGAAGAGGGGATCAGATGGACTAAAACATATTGGAAGATCAATCAAAAGTGGAGTCACTTGGTCAGTTTTTCCGGAAGATCTTAAAGTTTCGCAGAAAAAAGTATTTGATCCTCAAGATAAGAATCTTCTGTATTGGAACAAGTTTTTCGAGATTCTATGCATTCTTTCAATAGCTTGTGATCCATTCTTTTTTTACCTTCCTTATTTCAACCACAAATCGTTTTGCTTAGCAATAGATAACAAGCTCGCGAGTTTTATTATTACATTGAGAACAATATGTGATTGCATTTATCTCATTCGCATAAGTTTTCAATTTCGCACCGCCTTCATTGCACCTTCATCTCGAGTATTTGGAAGAGGCGAACTTGTCATAGATCCTGGATTGATCGCGAAACGATATTTACAACGCTACTTCATTTTTGACTTCTTGTCTGTACTGCCATTCCCACAGGTTATCGTATGGAAATATCTTTATACTACAAGACGTATAGAAGTATTGGATACAAAGACATCGCTTCTGAGAGCTGTCATCATGCAATACTTACCGAGATTTGTACGATTTATACCGTTGGCTTCAGAAGTTAAAAAGACGGCCGGTGTTTTCTCTGAAAATGCATTGCTTGGTGCTATGTACTATTTGATTTGGTATATGCTTGCTAGCCATATTACTGGTTCTGTCTGGTACTTACTAGCCATAGAACGTAACGACACGTGTTGGAAGAATGCTTGTAAGGAGGTTCCAGGATGTAACTCGCATTTTTTGTATTGTGGAAGTACGAGTAAGCATATACGAGGGTACAATCAATGGAGAAATGTCAGTGAATCTGTTCTTAAAAGTAAATGCTTTGTTGAAGATGGTAACTCAGCTTTTAATTATGGAATCTTCTCTCAAGCTATAGAGTCTGATATTGTTGCTTCCATACAAGTCTTCCCTAAATTTTGTTACTGTCTATGGTGGGGACTTCAGAATTTGAGTACACTTGGTCAGGGGCTTCTTACTAGTACTTACCCCGGGGAGGTTATGTTTTCGATAGTAATAGCTATTATGGGGCTTGTTCTTTTTGCTCTTCTCATCGGAAACATGCAGACCTACCTTAACTCTATGTCGGTTCGTCTGGAGGAAATGAGGATCAAAAGGCGTGATTCCGAGCAGTGGATGCATCATCGCTTGCTTCCTTCGGAGCTAAGGGAAAGAGTGAGACGATACGACCAATACAAGTGGTTGAACACGCGTGGAGTAGATGAAGAAAACTTGGTTCAGAGTCTTCCAAAAGATCTCAGAAGAGATATCAAACGTCATCTTTGTTTGAATTTGGTCCGAAGGGTTCCTCTCTTTGCTAACATGGACGAACGCTTGCTTGATGCAATATGCGAGCGATTGAAACCGAGTTTATATACAGAAGCAACCTACATAGTTAGGGAAGGCGATCCAGTTGACGAGATGTTGTTCATCATTCGTGGTCGTCTAGAGAGTGTTACTACGGATGGTGGAAGAAGCGGCTTTTTCAACAGAGGAGTTTTGAAGGAAGGTGATTTCTGTGGTGAAGAGTTGTTAACATGGGCATTGGATCCAAAATCTGCTGCTAACTTGCCATCATCAACTAGAACAGTGAAAGCTATGAGTGAAGTAGAGGCATTTGCTTTAGAAGCGGAGGAGTTAAAGTTTGTCGCATCACAATTTAGACACATACATAGTAGACAGGTTCAACATACCTTCCGTTTCTACTCGCAACAATGGAGAACATGGGCTGCAATCTACATTCAAGCTGCATGGAGGAAGCATTTAAAGAGAAGGCGAAGGAAAGAGGAAGAAGAATACTATGAAGGAATCGATGAATCCACAAAGGCTTTGGTTCCACAAGCCCAAAATTTGTCAAAATTTGGAATTAATACAACAGTCTTTGCTTCTCGCTTTGCTGCTAATCTTCGTGGTTTTAGACGACGAATTCCAAGTTCTAGAGACCTGTTGAGTATCCCGAAACCCCCAGAACCTGACTTTAGTGCTCTCGAGAATGAAGAGTGA 2265 0.4013 MNTHKHSRNLYVIFFTMFDSGYKSQYIGGQKEKFVRLDDLDSNSSKQSSSSGMKKLRFNINSLPIPGRGKKNTSKSFRFGVKRGSDGLKHIGRSIKSGVTWSVFPEDLKVSQKKVFDPQDKNLLYWNKFFEILCILSIACDPFFFYLPYFNHKSFCLAIDNKLASFIITLRTICDCIYLIRISFQFRTAFIAPSSRVFGRGELVIDPGLIAKRYLQRYFIFDFLSVLPFPQVIVWKYLYTTRRIEVLDTKTSLLRAVIMQYLPRFVRFIPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLAIERNDTCWKNACKEVPGCNSHFLYCGSTSKHIRGYNQWRNVSESVLKSKCFVEDGNSAFNYGIFSQAIESDIVASIQVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLVLFALLIGNMQTYLNSMSVRLEEMRIKRRDSEQWMHHRLLPSELRERVRRYDQYKWLNTRGVDEENLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEATYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKSAANLPSSTRTVKAMSEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRKHLKRRRRKEEEEYYEGIDESTKALVPQAQNLSKFGINTTVFASRFAANLRGFRRRIPSSRDLLSIPKPPEPDFSALENEE 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05046 754 Gene3D Jelly Rolls 523 643 IPR014710 -
Vivi5g05046 754 SUPERFAMILY cAMP-binding domain-like 455 645 IPR018490 -
Vivi5g05046 754 ProSiteProfiles IQ motif profile. 661 690 IPR000048 GO:0005515
Vivi5g05046 754 SMART cnmp_10 525 656 IPR000595 -
Vivi5g05046 754 Pfam Cyclic nucleotide-binding domain 546 635 IPR000595 -
Vivi5g05046 754 Pfam Ion transport protein 125 452 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi5g05046 754 ProSiteProfiles cAMP/cGMP binding motif profile. 525 655 IPR000595 -
Vivi5g05046 754 FunFam Cyclic nucleotide-gated ion channel 1 523 641 - -
Vivi5g05046 754 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 107 747 - -
Vivi5g05046 754 FunFam Cyclic nucleotide-gated ion channel 1 452 516 - -
Vivi5g05046 754 MobiDBLite consensus disorder prediction 735 754 - -
Vivi5g05046 754 SUPERFAMILY Voltage-gated potassium channels 118 447 - -
Vivi5g05046 754 CDD CAP_ED 525 656 IPR000595 -
Vivi5g05046 754 Gene3D - 127 450 - -
Vivi5g05046 754 Gene3D Helix hairpin bin 452 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05046 Vivi-Chr5 151089119 151092872 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05046 22 749 Ion Channels AT1G15990 67.156 0.0 988
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05046 K05391 - gmx:100810453 1191.41