Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05038 ATGGCAGGTAACAAGAGATCAAGCCAAACAAGTCCTGTAGGAAGTCCAACATCCGGCAACATCTCCGACAGTTCCTCCTCAAAAGAACAAGACAGGTTCCTCCCAATCGCCAACGTGAGCCGCATAATGAAGAGAGCATTACCAGCCAACGCTAAAATCTCAAAAGAAGCGAAAGAAACCGTTCAAGAATGTGTCTCTGAGTTCATAAGCTTCATAACCGGTGAAGCATCCGATAAGTGTCAACGCGAGAAGAGAAAAACTATCAACGGTGATGATCTTCTTTGGGCTATGACAACACTTGGTTTTGAAAACTATGTTGGTCCTTTGAAGGTTTATCTTAATAATTATAGAGAAACCGAAGGAGAAAAGAGTAATTTATCATCTTCTTCGTCTATGGTTAGTACTAAACAAGATGATTATTATAATCATGATCATGGTTCTTCAAATGGTGGATTTTATAATTCTCAAGGTGTTAGTGAGAATGGTTCTAAGAGGTTTCAAGAGATTGTGGATTATAGAGTGATTGGTCAAAGTGGTGTTGTTGGTGATGAAACAGAAAATGCAATTGCTAGTGGTAATGGAATTTTGCCACCAAACCTACGTTATAGGGTTGAATGGTAG 621 0.3929 MAGNKRSSQTSPVGSPTSGNISDSSSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNNYRETEGEKSNLSSSSSMVSTKQDDYYNHDHGSSNGGFYNSQGVSENGSKRFQEIVDYRVIGQSGVVGDETENAIASGNGILPPNLRYRVEW 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05038 206 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vivi5g05038 206 MobiDBLite consensus disorder prediction 120 156 - -
Vivi5g05038 206 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Vivi5g05038 206 SUPERFAMILY Histone-fold 30 144 IPR009072 GO:0046982
Vivi5g05038 206 MobiDBLite consensus disorder prediction 1 32 - -
Vivi5g05038 206 Gene3D Histone, subunit A 20 147 IPR009072 GO:0046982
Vivi5g05038 206 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Vivi5g05038 206 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Vivi5g05038 206 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Vivi5g05038 206 MobiDBLite consensus disorder prediction 120 137 - -
Vivi5g05038 206 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vivi5g05038 206 FunFam Nuclear transcription factor Y subunit B-3 22 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05038 Vivi-Chr5 151030800 151031689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05038 25 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.408 5.73e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi5g05038 CBFD_NFYB_HMF 1.1e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05038 K08065 - gmx:100810059 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05038 5 151030800 151031689 Vivi5g05038 5 151030800 151031689 ECH