Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05025 ATGGAAGATCTCACGTATGAATTCAGTGACTCCTATGAATGTTCCATTGATCCAAGTTTCTTCATGAGTAACCCCGCACTGGATGATTTAGCCATTAACAACATTGCCATTAACAATGGACCCACTTCAATGTTCCAACAAAATGTAACCAATTTACCCATTAATAACAATAATCTACCCCACCAGAATCACCATGCAGTATTTCAACAGGAACATGGTACTGACTTTAATGATCATTTTTCCACTCCAATGTTCCAACAAAATCATCATGGTAGTAATACTAATGATGATCAATTTAATCACAATACAATGTCACAAGAAGACCACCTTGATAGTATTAGTGATTCATTTTTCGATGGAATGCTACAAGAAATGCATGAGGATGAACAAATTCAACCTGTGAATCAGATTCCGGTTTTGCCGAACGAAACCGATGCAATGACTCTTGATCAATGGCCTCCCGCACCACTCCCATATTTTTGCAGTTGTTGTAATGTTCTCAGAGAAATCATTCACGCTAATGGTGTTCAATTTGAAAAGCTTGAGATTCATGGAAGGCTAGGTTTGATTACACATGCAATTCATCACCAGACACCTGTTAATGGAGGCCCACCAATTAACCAAATGATTGATTTTAGCAGGAGAAACCTTGATGAAATAAAGAAATTTCTGGCGCAATACTGCATGGATCGTATTTCAGCAGGATATTTTATTCTACAAGATCCCTTGTCTTCATATTATGAGACTCTTTGCACTGGATTGGATTGGGTTGAAGATTTTAACATTGAGGGTATTCTTGATAATAATAATCAAAATAATTCAGATGAGATGGTAGAACAAGAGCAACAACAAGAACAAATGGGTGAGAATGGAACTCCTACCGCAACACCGGATAAAAAGGACCTCTCAAAACAGAGAAAAAAAGCGGGAAAATTGACATTAGCTGATTTAATCGATCATTTTCATCTGCCTATTGAGGAAGCATCGGAAAAGGTGGAATTGTGTCCAACCGTTCTCAAGAAAACATGCCGCAAAGCAGGATTAACAAGATGGCCTCACAGAAAGGTGAAGAGCCTTTTGAAGCAGATAGCATTGCTAGAGAGTCAATTGGGAAGACAAGATGCAGCGACAAGGGCAAGGACTGAAAAAGATATTAGCGAGCTTAAGGAAGAAATGATTAAGCATTGTGGTGGACTTATTCCAACGGCCATGTATAACATCGCTGCCTTCTTGCCACCACAGAATCAGCAACGTAGGTAG 1260 0.3897 MEDLTYEFSDSYECSIDPSFFMSNPALDDLAINNIAINNGPTSMFQQNVTNLPINNNNLPHQNHHAVFQQEHGTDFNDHFSTPMFQQNHHGSNTNDDQFNHNTMSQEDHLDSISDSFFDGMLQEMHEDEQIQPVNQIPVLPNETDAMTLDQWPPAPLPYFCSCCNVLREIIHANGVQFEKLEIHGRLGLITHAIHHQTPVNGGPPINQMIDFSRRNLDEIKKFLAQYCMDRISAGYFILQDPLSSYYETLCTGLDWVEDFNIEGILDNNNQNNSDEMVEQEQQQEQMGENGTPTATPDKKDLSKQRKKAGKLTLADLIDHFHLPIEEASEKVELCPTVLKKTCRKAGLTRWPHRKVKSLLKQIALLESQLGRQDAATRARTEKDISELKEEMIKHCGGLIPTAMYNIAAFLPPQNQQRR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05025 419 MobiDBLite consensus disorder prediction 268 305 - -
Vivi5g05025 419 PANTHER PROTEIN RKD4 151 391 IPR044607 GO:0003700
Vivi5g05025 419 ProSiteProfiles RWP-RK domain profile. 294 379 IPR003035 -
Vivi5g05025 419 MobiDBLite consensus disorder prediction 268 298 - -
Vivi5g05025 419 Pfam RWP-RK domain 312 359 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05025 Vivi-Chr5 150899100 150901208 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05025 269 359 AtRKD Transcription Factor Family AT4G35590 35.052 8.89e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vivi5g05025 RWP-RK 3.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05025 - - vvo:131607780 822.772