Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05023 ATGGAAAATCTTTTTGACGATATTGCTCCTGGTCCTACTACACGTGCTAGATCGAGTGCCAGGTTTGCGCCTAAGGCTAAACCGAAACAACCGCCTCGAAAGAATGTATCTGCGTCGAAAGATGAGAACAATGTGCATGTTGCTTCATCAACCACTCTCAAAGAATCTGAAGGAGTTTCTCAGAATGAATCTCATAATGCAGTTACTGTAAGTTCTTCAATTGAGGAGCCTAACAAGTCTGGTCTTCATCCTGATATCCATGAAAATGAAATGAATAATGTGGCTGCCCCGTCTACTGTCTCCTCAACCATAGTTAGGGTGGAAGAACAGCCTAAAAACGGGGAAGGTTCATTTCTCAGTACTGACAAAAGTTTGCAAGTTCTTGATAATTCAGGCGACGGTAACACTGCAATACCTGAGAGCAACATTCATTCAAATTTTGAGTTTGGAAAGGTATTGTCTGCTGAAATTGAGTTGGATCCTTTCAGCAATGTCCTCCCTGATCCTGGCACTGGGAATGCTCGTAAGTTTCAACCCAAGGTTAAGCCACGACCTAGAGTCAGCAATACACCAGCTATTGCTTCTACTTCATCTGGTGAGTTACCTCCTTGCACAAGTTTTGTTCTTCCAGCATATGATGGCAAGAGTAGGCCGGAATCACAGGAAGGTGCAGACTTGAATCCTGACTGCCAAATGCATAATGTCTATTATCAATCCATGAATTCTGGCACTGATCCACCATCTGGAATTTCAATACATGAAGGATTGACAAACTCTGCAGGTAGTCCCACATTGGCTGACTTTTTGCAGCAAGACGTTACTGGAGAGAAAGAAGATGCTAATGAGACAATAAAATCTTCAAAGAAGCATAAAAGATCATCTACTACTGGCGTGGAGGATAAAGGTGCTAAAACCTCAAGGCAGACAAGAAAACGAGCAGCTCGTAAACCTGCTAAAAGCTCATTGATTACGGCTATTGAGGATGATGATCTCCTCCACCCTCCTTATGATTTTGCTGAAGATGAACTTGAAGAAAACAATGATGAGGATGAAGTGGTTTGTTCACCCAAAAAGAAAAAAGCATCAACAAATTCAAAGAAATCTGTGGCTAAAAATGGGAAAACATCTGGAAAACGCAAGAAGGCTAATGGTGATATTGAAAAGGCAACCGAAGAATCTCCTAAAAAGTTCCCGCATTCATCTCGGCGAAGAAGAAGATGTGTGGACAAGGCTCTGCTGGATGATGAATTTCTTGATCAGCGGACATTACCTATTAGGGATATTATTTTACTTGCAGAGTATAAAGAGCGATTGGCGAAAAAGGAGGCAGCAACTTCTAAAACATCTTCAACCAATCAAAGTGATGGGGATTTTCGTCATGAGGTTGATGTTAATAATGCAGAGGAGTTTTTTGGTTCAGATGATGAATTTAGAGACCCTGATGATGATGATCAGGTAAGTGAGAGGTTTACATCCACTGCCCCCTTATTGAATTACCAGTCTTTCATGGATAAGACACCTAGGGGAAAATGGTCAAAGCAAGATACTGAAGTGTTTTATGAGGCTGTTAGGCAGTTTGGCACAGACTTTTCTATGATACAACAGCTTTTCCCTGATAAAACGCGTCATCAAGTTAAGTTGAAGTACAAGAAGGAAGAGCGGCAACATCCTTTACTGTTATCTGATGCTGTGAATAATCGTTCAAAAGATCTTTCTTTTTTCAAATTGGTGGTTGAGAGGCAGCAACAAAACTCTAATAAGGAAGAACAAGAGACCGCTGAAGATGCCTCAGATTTAATGCTCGAGGAGGAGGCTGAGGACCCGACACCTGAAACTAATGAAGAGGTTGCAACAACTAAGCAGGAGCAGGAGCACATAGACGTTAGAAATCAGGAAGATTCTACAGCATATCCAATTCCAGAGCAATCTGATGATAGTGAAGATGACTTACTAAAATGGTCTCAGTATCAAAGTGCTATTTAG 1983 0.4135 MENLFDDIAPGPTTRARSSARFAPKAKPKQPPRKNVSASKDENNVHVASSTTLKESEGVSQNESHNAVTVSSSIEEPNKSGLHPDIHENEMNNVAAPSTVSSTIVRVEEQPKNGEGSFLSTDKSLQVLDNSGDGNTAIPESNIHSNFEFGKVLSAEIELDPFSNVLPDPGTGNARKFQPKVKPRPRVSNTPAIASTSSGELPPCTSFVLPAYDGKSRPESQEGADLNPDCQMHNVYYQSMNSGTDPPSGISIHEGLTNSAGSPTLADFLQQDVTGEKEDANETIKSSKKHKRSSTTGVEDKGAKTSRQTRKRAARKPAKSSLITAIEDDDLLHPPYDFAEDELEENNDEDEVVCSPKKKKASTNSKKSVAKNGKTSGKRKKANGDIEKATEESPKKFPHSSRRRRRCVDKALLDDEFLDQRTLPIRDIILLAEYKERLAKKEAATSKTSSTNQSDGDFRHEVDVNNAEEFFGSDDEFRDPDDDDQVSERFTSTAPLLNYQSFMDKTPRGKWSKQDTEVFYEAVRQFGTDFSMIQQLFPDKTRHQVKLKYKKEERQHPLLLSDAVNNRSKDLSFFKLVVERQQQNSNKEEQETAEDASDLMLEEEAEDPTPETNEEVATTKQEQEHIDVRNQEDSTAYPIPEQSDDSEDDLLKWSQYQSAI 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05023 660 ProSiteProfiles SANT domain profile. 510 554 IPR017884 -
Vivi5g05023 660 MobiDBLite consensus disorder prediction 232 269 - -
Vivi5g05023 660 Gene3D - 511 595 - -
Vivi5g05023 660 MobiDBLite consensus disorder prediction 272 307 - -
Vivi5g05023 660 MobiDBLite consensus disorder prediction 111 141 - -
Vivi5g05023 660 MobiDBLite consensus disorder prediction 378 398 - -
Vivi5g05023 660 MobiDBLite consensus disorder prediction 189 203 - -
Vivi5g05023 660 MobiDBLite consensus disorder prediction 595 611 - -
Vivi5g05023 660 CDD SANT 510 551 IPR001005 -
Vivi5g05023 660 MobiDBLite consensus disorder prediction 441 462 - -
Vivi5g05023 660 MobiDBLite consensus disorder prediction 41 78 - -
Vivi5g05023 660 SUPERFAMILY Homeodomain-like 509 557 IPR009057 -
Vivi5g05023 660 MobiDBLite consensus disorder prediction 582 660 - -
Vivi5g05023 660 Coils Coil 586 606 - -
Vivi5g05023 660 SMART sant 507 555 IPR001005 -
Vivi5g05023 660 MobiDBLite consensus disorder prediction 163 405 - -
Vivi5g05023 660 Pfam Myb DNA-binding like 501 585 IPR039467 -
Vivi5g05023 660 MobiDBLite consensus disorder prediction 1 87 - -
Vivi5g05023 660 MobiDBLite consensus disorder prediction 617 631 - -
Vivi5g05023 660 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 17 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05023 Vivi-Chr5 150888559 150893951 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi5g05023 Myb_DNA-bind_7 6.5e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05023 K15198 - gmx:100792788 445.662