Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05022 ATGGAAAATCTTTTTGACGATATTGCTCCTGGTCCTACTACACGTGCTAGATCGAGTGCCAGGTTTGCGCCTAAGGCTAAACCGAAACAACCGCCTCGAAAGAATGTATCTGCGTCGAAAGATGAGAACAATGTGCATGTTGCTTCATCAACCACTCTCAAAGAATCTGAAGGAGTTTCTCAGAATGAATCTCATAATGCAGTTACTGTAAGTTCTTCAATTGAGGAGCCTAACAAGTCTGGTCTTCATCCTGATATCCATGAAAATGAAATGAATAATGTGGCTGCCCCGTCTACTGTCTCCTCAACCATAGTTAGGGTGGAAGAACAGCCTAAAAACGGGGAAGGTTCATTTCTCAGTACTGACAAAAGTTTGCAAGTTCTTGATAATTCAGGCGACGGTAACACTGCAATACCTGAGAGCAACATTCATTCAAATTTTGAGTTTGGAAAGGTGGGAGAGGTATTGTCTGCTGAAATTGAGTTGGATCCTTTCAGCAATGTCCTCCCTGATCCTGGCACTGGGAATGCTCGTAAGTTTCAACCCAAGGTTAAGCCACGACCTAGAGTCAGCAATACACCAGCTATTGCTTCTACTTCATCTGGTGAGTTACCTCCTTGCACAAGTTTTGTTCTTCCAGCATATGATGGCAAGAGTAGGCCGGAATCACAGGAAGGTGCAGACTTGAATCCTGACTGCCAAATGCATAATGTCTATTATCAATCCATGAATTCTGGCACTGATCCACCATCTGGAATTTCAATACATGAAGGATTGACAAACTCTGCAGGTAGTCCCACATTGGCTGACTTTTTGCAGCAAGACGTTACTGGAGAGAAAGAAGATGCTAATGAGACAATAAAATCTTCAAAGAAGCATAAAAGATCATCTACTACTGGCGTGGAGGATAAAGGTGCTAAAACCTCAAGGCAGACAAGAAAACGAGCAGCTCGTAAACCTGCTAAAAGCTCATTGATTACGGCTATTGAGGATGATGATCTCCTCCACCCTCCTTATGATTTTGCTGAAGATGAACTTGAAGAAAACAATGATGAGGATGAAGTGGTTTGTTCACCCAAAAAGAAAAAAGCATCAACAAATTCAAAGAAATCTGTGGCTAAAAATGGGAAAACATCTGGAAAACGCAAGAAGGCTAATGGTGATATTGAAAAGGCAACCGAAGAATCTCCTAAAAAGTTCCCGCATTCATCTCGGCGAAGAAGAAGATGTGTGGACAAGGCTCTGCTGGATGATGAATTTCTTGATCAGCGGACATTACCTATTAGGGATATTATTTTACTTGCAGAGTATAAAGAGCGATTGGCGAAAAAGGAGGCAGCAACTTCTAAAACATCTTCAACCAATCAAAGTGATGGGGATTTTCGTCATGAGGTTGATGTTAATAATGCAGAGGAGTTTTTTGGTTCAGATGATGAATTTAGAGACCCTGATGATGATGATCAGGTAAGTGAGAGGTTTACATCCACTGCCCCCTTATTGAATTACCAGTCTTTCATGGATAAGACACCTAGGGGAAAATGGTCAAAGCAAGATACTGAAGTGTTTTATGAGGCTGTTAGGCAGTTTGGCACAGACTTTTCTATGATACAACAGCTTTTCCCTGATAAAACGCGTCATCAAGTTAAGTTGAAGTACAAGAAGGAAGAGCGGCAACATCCTTTACTGTTATCTGATGCTGTGAATAATCGTTCAAAAGATCTTTCTTTTTTCAAATTGGTGGTTGAGAGGCAGCAACAAAACTCTAATAAGGAAGAACAAGAGACCGCTGAAGATGCCTCAGATTTAATGCTCGAGGAGGAGGCTGAGGACCCGACACCTGAAACTAATGAAGAGGTTGCAACAACTAAGCAGGAGCAGGAGCACATAGACGTTAGAAATCAGGAAGATTCTACAGCATATCCAATTCCAGAGCAATCTGATGATAGTGAAGATGACTTACTAAAATGGTCTCAGTATCAAAGTGCTATTTAG 1992 0.4147 MENLFDDIAPGPTTRARSSARFAPKAKPKQPPRKNVSASKDENNVHVASSTTLKESEGVSQNESHNAVTVSSSIEEPNKSGLHPDIHENEMNNVAAPSTVSSTIVRVEEQPKNGEGSFLSTDKSLQVLDNSGDGNTAIPESNIHSNFEFGKVGEVLSAEIELDPFSNVLPDPGTGNARKFQPKVKPRPRVSNTPAIASTSSGELPPCTSFVLPAYDGKSRPESQEGADLNPDCQMHNVYYQSMNSGTDPPSGISIHEGLTNSAGSPTLADFLQQDVTGEKEDANETIKSSKKHKRSSTTGVEDKGAKTSRQTRKRAARKPAKSSLITAIEDDDLLHPPYDFAEDELEENNDEDEVVCSPKKKKASTNSKKSVAKNGKTSGKRKKANGDIEKATEESPKKFPHSSRRRRRCVDKALLDDEFLDQRTLPIRDIILLAEYKERLAKKEAATSKTSSTNQSDGDFRHEVDVNNAEEFFGSDDEFRDPDDDDQVSERFTSTAPLLNYQSFMDKTPRGKWSKQDTEVFYEAVRQFGTDFSMIQQLFPDKTRHQVKLKYKKEERQHPLLLSDAVNNRSKDLSFFKLVVERQQQNSNKEEQETAEDASDLMLEEEAEDPTPETNEEVATTKQEQEHIDVRNQEDSTAYPIPEQSDDSEDDLLKWSQYQSAI 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05022 663 MobiDBLite consensus disorder prediction 381 401 - -
Vivi5g05022 663 ProSiteProfiles SANT domain profile. 513 557 IPR017884 -
Vivi5g05022 663 MobiDBLite consensus disorder prediction 240 272 - -
Vivi5g05022 663 SUPERFAMILY Homeodomain-like 512 560 IPR009057 -
Vivi5g05022 663 CDD SANT 513 554 IPR001005 -
Vivi5g05022 663 MobiDBLite consensus disorder prediction 111 141 - -
Vivi5g05022 663 MobiDBLite consensus disorder prediction 620 634 - -
Vivi5g05022 663 MobiDBLite consensus disorder prediction 444 465 - -
Vivi5g05022 663 MobiDBLite consensus disorder prediction 240 408 - -
Vivi5g05022 663 Coils Coil 589 609 - -
Vivi5g05022 663 SMART sant 510 558 IPR001005 -
Vivi5g05022 663 MobiDBLite consensus disorder prediction 275 310 - -
Vivi5g05022 663 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 17 662 - -
Vivi5g05022 663 MobiDBLite consensus disorder prediction 598 614 - -
Vivi5g05022 663 MobiDBLite consensus disorder prediction 41 78 - -
Vivi5g05022 663 Gene3D - 514 598 - -
Vivi5g05022 663 MobiDBLite consensus disorder prediction 167 203 - -
Vivi5g05022 663 MobiDBLite consensus disorder prediction 1 87 - -
Vivi5g05022 663 Pfam Myb DNA-binding like 504 588 IPR039467 -
Vivi5g05022 663 MobiDBLite consensus disorder prediction 585 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05022 Vivi-Chr5 150888559 150893951 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi5g05022 Myb_DNA-bind_7 6.5e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05022 K15198 - gmx:100792788 446.432