Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi5g05011 | ATGGGACTTCATCACAGAAAACTCATAACATGTGAAGTCTTGTGTCATGATGATGTAGAGCCTTGTTCCACAGACTGTTATAGCGTCCTCCCTCCACCACCACCATCTAACAACTCCAAACACAAAACCACCACTTACTTGATCATAAGTTTTTCTATTGTAGCAGCTATTTTCATTGTTTTATGCTGCTATGCTATCTATGTCAAGTTTTTCTCCCACAGGAACAGTTCAAGAAGGAGAACCTTGTTAACAAGGCAACAAACGGAACATGGTTTTGCTGTTGATGAACAACATGATGATGGTTCTGTTGTTGACCACCCCATATGGTATATTCGAACTCCTGGTCTTCAACAAGCCGTTATTAATGCAATCACTGTTGTTAAGTTCAAGAAAGGTGAAGGCTTGATTGATGGGTCGGATTGTTCTGTTTGTTTGAGTGAGTTTGAAGAAGATGAGAATCTTAGACTTTTGCCTAAGTGTAACCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTGGATCACACACTAGTTGTCCTATGTGTAGAGCTCCTATTGTTGTTGATCCTTTAAGGATTCCTTCTATGGAGCCTAATGTTTTTGTCGAAAGTTCTCGGATAGAAGATTCGGAAAATAACGGTGAACATGGAATTGGAATTGAAGATAGTGTTGTTGATGATGATCAATTGAGAAATGGTGAAGAAGAAGAAGAAGAAGAAGATGAAGAGGTTGAGGAAAATGAGAGTTCAAGGTTAGAGATGGTAAATGTGCAGCCAAGAAGATCAGTTTCTTTTGATTCGTCTTCTGCTGCTAAGATCAATCTTGCTCTTTCCAATAAGCAAGAGGTAGGTGAAGTCAATGAACAAATTGTTTCAAAGAGGGTTGGTGGAAATGGCAATATGGGAAATATGCATAGTGCTCCTAGCTCAATGGATAGGTCAAGATCCTTCAATGGAAAACATATACTATCTTTGTATAGCAGCAACCAGAAGAAGTCAAATGTTCCACCTAGAAGCTTTTGA | 1023 | 0.3881 | MGLHHRKLITCEVLCHDDVEPCSTDCYSVLPPPPPSNNSKHKTTTYLIISFSIVAAIFIVLCCYAIYVKFFSHRNSSRRRTLLTRQQTEHGFAVDEQHDDGSVVDHPIWYIRTPGLQQAVINAITVVKFKKGEGLIDGSDCSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLGSHTSCPMCRAPIVVDPLRIPSMEPNVFVESSRIEDSENNGEHGIGIEDSVVDDDQLRNGEEEEEEEDEEVEENESSRLEMVNVQPRRSVSFDSSSAAKINLALSNKQEVGEVNEQIVSKRVGGNGNMGNMHSAPSSMDRSRSFNGKHILSLYSSNQKKSNVPPRSF | 340 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi5g05011 | 340 | CDD | RING-H2_EL5-like | 140 | 183 | - | - | |
Vivi5g05011 | 340 | Pfam | Ring finger domain | 140 | 183 | IPR001841 | - | |
Vivi5g05011 | 340 | MobiDBLite | consensus disorder prediction | 302 | 340 | - | - | |
Vivi5g05011 | 340 | MobiDBLite | consensus disorder prediction | 206 | 252 | - | - | |
Vivi5g05011 | 340 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 38 | 189 | IPR044675 | - | |
Vivi5g05011 | 340 | MobiDBLite | consensus disorder prediction | 228 | 248 | - | - | |
Vivi5g05011 | 340 | Coils | Coil | 230 | 250 | - | - | |
Vivi5g05011 | 340 | FunFam | RING-H2 finger protein ATL54 | 116 | 189 | - | - | |
Vivi5g05011 | 340 | ProSiteProfiles | Zinc finger RING-type profile. | 141 | 183 | IPR001841 | - | |
Vivi5g05011 | 340 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 189 | IPR013083 | - | |
Vivi5g05011 | 340 | SUPERFAMILY | RING/U-box | 135 | 189 | - | - | |
Vivi5g05011 | 340 | MobiDBLite | consensus disorder prediction | 208 | 227 | - | - | |
Vivi5g05011 | 340 | SMART | ring_2 | 141 | 182 | IPR001841 | - | |
Vivi5g05011 | 340 | MobiDBLite | consensus disorder prediction | 293 | 340 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi5g05011 | Vivi-Chr5 | 150671474 | 150672804 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi5g05011 | 35 | 194 | C3H Transcription Factor Family | AT1G72220 | 46.875 | 1.54e-46 | 161 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vivi5g05011 | 5 | 150671474 | 150672804 | Vivi5g05011 | 5 | 150671474 | 150672804 | ECH |