Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05011 ATGGGACTTCATCACAGAAAACTCATAACATGTGAAGTCTTGTGTCATGATGATGTAGAGCCTTGTTCCACAGACTGTTATAGCGTCCTCCCTCCACCACCACCATCTAACAACTCCAAACACAAAACCACCACTTACTTGATCATAAGTTTTTCTATTGTAGCAGCTATTTTCATTGTTTTATGCTGCTATGCTATCTATGTCAAGTTTTTCTCCCACAGGAACAGTTCAAGAAGGAGAACCTTGTTAACAAGGCAACAAACGGAACATGGTTTTGCTGTTGATGAACAACATGATGATGGTTCTGTTGTTGACCACCCCATATGGTATATTCGAACTCCTGGTCTTCAACAAGCCGTTATTAATGCAATCACTGTTGTTAAGTTCAAGAAAGGTGAAGGCTTGATTGATGGGTCGGATTGTTCTGTTTGTTTGAGTGAGTTTGAAGAAGATGAGAATCTTAGACTTTTGCCTAAGTGTAACCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTGGATCACACACTAGTTGTCCTATGTGTAGAGCTCCTATTGTTGTTGATCCTTTAAGGATTCCTTCTATGGAGCCTAATGTTTTTGTCGAAAGTTCTCGGATAGAAGATTCGGAAAATAACGGTGAACATGGAATTGGAATTGAAGATAGTGTTGTTGATGATGATCAATTGAGAAATGGTGAAGAAGAAGAAGAAGAAGAAGATGAAGAGGTTGAGGAAAATGAGAGTTCAAGGTTAGAGATGGTAAATGTGCAGCCAAGAAGATCAGTTTCTTTTGATTCGTCTTCTGCTGCTAAGATCAATCTTGCTCTTTCCAATAAGCAAGAGGTAGGTGAAGTCAATGAACAAATTGTTTCAAAGAGGGTTGGTGGAAATGGCAATATGGGAAATATGCATAGTGCTCCTAGCTCAATGGATAGGTCAAGATCCTTCAATGGAAAACATATACTATCTTTGTATAGCAGCAACCAGAAGAAGTCAAATGTTCCACCTAGAAGCTTTTGA 1023 0.3881 MGLHHRKLITCEVLCHDDVEPCSTDCYSVLPPPPPSNNSKHKTTTYLIISFSIVAAIFIVLCCYAIYVKFFSHRNSSRRRTLLTRQQTEHGFAVDEQHDDGSVVDHPIWYIRTPGLQQAVINAITVVKFKKGEGLIDGSDCSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLGSHTSCPMCRAPIVVDPLRIPSMEPNVFVESSRIEDSENNGEHGIGIEDSVVDDDQLRNGEEEEEEEDEEVEENESSRLEMVNVQPRRSVSFDSSSAAKINLALSNKQEVGEVNEQIVSKRVGGNGNMGNMHSAPSSMDRSRSFNGKHILSLYSSNQKKSNVPPRSF 340
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05011 340 CDD RING-H2_EL5-like 140 183 - -
Vivi5g05011 340 Pfam Ring finger domain 140 183 IPR001841 -
Vivi5g05011 340 MobiDBLite consensus disorder prediction 302 340 - -
Vivi5g05011 340 MobiDBLite consensus disorder prediction 206 252 - -
Vivi5g05011 340 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 38 189 IPR044675 -
Vivi5g05011 340 MobiDBLite consensus disorder prediction 228 248 - -
Vivi5g05011 340 Coils Coil 230 250 - -
Vivi5g05011 340 FunFam RING-H2 finger protein ATL54 116 189 - -
Vivi5g05011 340 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Vivi5g05011 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 189 IPR013083 -
Vivi5g05011 340 SUPERFAMILY RING/U-box 135 189 - -
Vivi5g05011 340 MobiDBLite consensus disorder prediction 208 227 - -
Vivi5g05011 340 SMART ring_2 141 182 IPR001841 -
Vivi5g05011 340 MobiDBLite consensus disorder prediction 293 340 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi5g05011 Vivi-Chr5 150671474 150672804 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05011 35 194 C3H Transcription Factor Family AT1G72220 46.875 1.54e-46 161
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05011 5 150671474 150672804 Vivi5g05011 5 150671474 150672804 ECH