Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04999 ATGGGCCCTTCTGGCTCTGGAAAATCCACACTTCTTGATGCTTTAGCAGGAAGATTAAGCTCAAACATGAAGCATACAGGAAAAATTCTAATCAATGGCCACAAACAAGCACTGGCTTATGGAATATCAGGCTATGTAACACAAGACGAGGCTATGCTGTCAATGTTAACGGCCGGAGAAACTTTATACTATTCAGCTCAGCTTCAGTTTCCAGATTCTCTGTCCATAACAGAAAAAAAGGAGCAAGCAGATCTTATACTCAGAGAAATGGGCCTAATAGATGCTGTTAACACAAGGGTTGGAGGATGGAGTTCTAAAGGTCTAAGTGGAGGACAAAGGAGGAGACTTAGCATTTGCATTGAGATTCTAACGCGACCGAGACTTCTCTTCCTTGATGAACCGACGAGCGGACTCGATAGTGCAGCTTCATATTATGTCATGAGTAGGATTGCGCGGTTAAATTTAAGTGACGGTGTTCGAAGGACTGTTGTTGTATCCATCCACCAACCTAGCAGTGAAGTTTTTGAACTTTTTCATGACCTTTGTCTTCTGTCTTCTGGTGAAACTGTATATTTTGGTCCATCCTATGATGCAAATCAGTTTTTTGCTGCAAATGGTTTTCCTTGTCCAACACTCCACAATCCTTCTGATCATTACTTAAGGATAATAAACAAAGATTTTGAAACGGATGATGTTGAAGAAGGCTTTGGTAAGGGAGTAACCACAGAAGAAGCAATTGATATCCTTGTAAAGTCTTATAAATCATCTCGAATTAGAAAAAAAGTTAAAAAAGAAGTTGCGAAAATAAGTAAAAGTGACTCTGGTGCAATAGGGAAGAAGAGGACTCATGCTGCATTTATCACTCAATGTCTTGTTCTTATAAGAAGATCTTCTCTGCAATTGTTTCGAGACGTAGGAAACTACTGGCTTCGTTTAGTTGTCTTTGTTATAATTGCTATAAGCATTGGTTCTATCTTCTATAACATTGGTTCAGCTAGTGGATCAGGATCAATTCAGGGTAGAGGTTCATTGCTCACATTTCTTATTTCAGTTCTAACTTTCATGACCCTTGTTGGTGGATTCTCTCCTCTTTTGGAGGAAATGAAGGTATTTGAACGAGAGAGATTGAACGGACACTATGGTGTAACTGCATTTCTGATTGGAAATATATTCTCAGCTGTTCCTTACATTCTAATGATCTCTCTAATTCCTGGAGGAATAGCATACTACCTTTGTGGAATGCACAAAGGACTAGAACACTTTGTATACTTCATTTCATTGCTATTAGCCATTGTGATGTGGGTTGAGAGTCTCATGTTGGTTGTTGGAAGCATATCACCAAACTATGTAATAGGAATGTTCATCACTGGTGGAATTGAAGGACTCATGATACTAACAGCTGGATTCTATAGATTACCAAATGAACTACCTAAACCACTATGGAAATACCCTTTATACCATATATCATTCCTTAAGTATGCATTTCAAGGATCATTCAAGAATGAGTTTGAAAAGTTGAATGTTTCTATGGAGACCAAAACTATGAGTGGTAGGGAAATATTGGATGAGACATGGCATGTTGAAATGGGTTATTCTAAGTGGGTTGATCTTGTTATCATGTTTGGTATGATTGTGTTGTATAGAGTTTTGTTCTTGGTCATTACTAAGAGTAAGGAGAAGTTGAAGCCTTTTGTTGCAGTCATAAGTGTCATGACTGCCTCACCCCAAAAAGCCTTCTTTAACCCAGCACTAACCAACATGCACCTCACTCTTTCCAAAATAGTTCGATTAAACCTTTCTGCTAAATCATTTTGTCAGGGAGTACTTGCAATAATTTTGTGCCTTGCAATACCAGACACACCATAA 1866 0.3848 MGPSGSGKSTLLDALAGRLSSNMKHTGKILINGHKQALAYGISGYVTQDEAMLSMLTAGETLYYSAQLQFPDSLSITEKKEQADLILREMGLIDAVNTRVGGWSSKGLSGGQRRRLSICIEILTRPRLLFLDEPTSGLDSAASYYVMSRIARLNLSDGVRRTVVVSIHQPSSEVFELFHDLCLLSSGETVYFGPSYDANQFFAANGFPCPTLHNPSDHYLRIINKDFETDDVEEGFGKGVTTEEAIDILVKSYKSSRIRKKVKKEVAKISKSDSGAIGKKRTHAAFITQCLVLIRRSSLQLFRDVGNYWLRLVVFVIIAISIGSIFYNIGSASGSGSIQGRGSLLTFLISVLTFMTLVGGFSPLLEEMKVFERERLNGHYGVTAFLIGNIFSAVPYILMISLIPGGIAYYLCGMHKGLEHFVYFISLLLAIVMWVESLMLVVGSISPNYVIGMFITGGIEGLMILTAGFYRLPNELPKPLWKYPLYHISFLKYAFQGSFKNEFEKLNVSMETKTMSGREILDETWHVEMGYSKWVDLVIMFGMIVLYRVLFLVITKSKEKLKPFVAVISVMTASPQKAFFNPALTNMHLTLSKIVRLNLSAKSFCQGVLAIILCLAIPDTP 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04999 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 201 IPR027417 -
Vivi5g04999 621 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 1 571 - -
Vivi5g04999 621 ProSitePatterns ABC transporters family signature. 108 122 IPR017871 GO:0005524|GO:0016887
Vivi5g04999 621 Pfam ABC transporter 1 136 IPR003439 GO:0005524
Vivi5g04999 621 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 211 IPR003439 GO:0005524
Vivi5g04999 621 SMART AAA_5 1 187 IPR003593 GO:0016887
Vivi5g04999 621 Pfam ABC-2 type transporter 168 225 IPR043926 GO:0140359
Vivi5g04999 621 Gene3D - 1 219 IPR027417 -
Vivi5g04999 621 Pfam ABC-2 type transporter 288 503 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04999 Vivi-Chr5 150607539 150611497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04999 1 172 Calmodulin-binding Proteins AT2G36910 30.220 3.31e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04999 K05681 - gmx:100790102 941.414