Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04998 ATGGGTGGTAATGAAGGAGAAAAAGGTAGCATTACTGTGACATGGGAGAATTTGGAGGCCATTGTTACAAATGGAAAGAATAGAAAACTAATTCTGCAGGGACTTACTGGTTATGCCCAGCCAGGGAAGCTTTTGGCTGTCATGGGTCCTTCAGGCAGTGGCAAGTCAACACTCCTTGATGCTTTAGCAGGAAGATTGAAATCAAACATACAGCAATCAGGGAAGATTCTAATCAATGGCAAAAAACAAACACTGGCTTATGGAACATCGGGCTATGTAACACAAGATGATGCTATGCCGCCAACTTTAACAGCCAGTGAAACTTTATACTACTCAGCTCAACTTCAATTTCCAAACTCAATGTCCATAGCAGAGAAGAAGAGACAAGCAGATATCACACTTAGAGAAATGGGCCTGCAAGATGCTATTAACACAAGGGTTGGAGGGTATGGTTCTAAGGGCCTAAGTGGAGGGCAAAAGAGGAGACTAAGCATTTGCATTGAGATTCTAACACACCCTAGACTTCTTTTCCTTGATGAACCAACGAGTGGACTTGATAGTGCAGCTTCCTACTATGTTATGAGTAGAATTGCAAGTTTAAGTCTAAGGGATGGTATTCAAAGGACAATTGTTGCATCCATCCATCAGCCTTGTAGTGAAGTTTTTGAACTGTTCCAAGACCTCTGTCTTCTTTCTTCTGGGGAGACAGTATATTTTGGTAAAGCTTCTGAAGCAAATCAGTTTTTTGCTTCAAATGGTTTCCCTTGCCCAACTCTCTATAATCCTTCTGATCACTACTTACGGATCATAAACAAAGATTTCGAACAGGACATTGAAGAAGGCTTTGGTAAGGGAGTCATTACTGAAGAAGCAATTGGTATCCTTGTAAAAGCTTATAAGGCTTCTGAAATGAAAAGTCAAGTTCAGCTTGAAGTGACAAGAATTAGTGAATGGGATTTGGGTGCAATAAGGAATAAGAGGATCCACGCTCCATTTCTGACTCAGTGCAAGATTCTTATAAAAAGATCTTCCCTGCAACTGTATCGTGACATCAGCAACTACTGGTTACGTCTTGTTGTCTTTATTGCAATAGCTATAAGCCTAGGCTCTATCTTCCATCCCGTTGGCTCAAGTCATCGATCTATACAGGCCAGAGGATCGCTACTTTCATTTTTTATGTCCGTCCTGACTTTCATGACACTAGTTGGTGGATTCTCTCCCTTGATTGAGGAAATGAAGGTGTTTGAACGAGAGAGAATGAATGGGCACTATGGCATTACTGCTTTTCTCATTGGCAACATATTATCTCCTATTCCTTACATGTTAATGATCTCTCTCATTTCTGGGGTAATAGTGTGTTACCTTTCTGGACTACACAAAGGAGTAGAGCAATATCTATACTTTGCTTCTATCCTATTTGCCATTATGATGTGGGTTGAGAGCCTTATGATGGTTGTGGGGAGTATCGTCCCAAATTTTGTGATGGGAGTGATTATTGCTGGTGGAGTTGAAGGACTTGCAATTTTAACAGCTGGATTCTATCGACTTCCTGATGATCTTCCAAATCCATTATGGAAGTACCCTTGCTACTACATTTCCTTCCTCACATATGCTTTTCAAGGATCATTCAAGAATGAATTTGAAGGCTTAACATTTGTTTGGCATCAAAATGGAGGTACCATAAAAGTTAGTGGTAGAGATATATTAACTGATACATGGCATGTGCAAATGGATCATTCTAAGTGGGTTGATCTTGCTATCATGTTTGGAATGATTGTTGTTTATCGAATTCTATTCTTGGTCATCAATAAGATCAAGGAGAAGTCAAAACCTACTGTTCGTACCCTACATGGACCCAAAGCAAAAACTTTCTCTAGAACCAATATGGATGATCTCTAA 1899 0.4002 MGGNEGEKGSITVTWENLEAIVTNGKNRKLILQGLTGYAQPGKLLAVMGPSGSGKSTLLDALAGRLKSNIQQSGKILINGKKQTLAYGTSGYVTQDDAMPPTLTASETLYYSAQLQFPNSMSIAEKKRQADITLREMGLQDAINTRVGGYGSKGLSGGQKRRLSICIEILTHPRLLFLDEPTSGLDSAASYYVMSRIASLSLRDGIQRTIVASIHQPCSEVFELFQDLCLLSSGETVYFGKASEANQFFASNGFPCPTLYNPSDHYLRIINKDFEQDIEEGFGKGVITEEAIGILVKAYKASEMKSQVQLEVTRISEWDLGAIRNKRIHAPFLTQCKILIKRSSLQLYRDISNYWLRLVVFIAIAISLGSIFHPVGSSHRSIQARGSLLSFFMSVLTFMTLVGGFSPLIEEMKVFERERMNGHYGITAFLIGNILSPIPYMLMISLISGVIVCYLSGLHKGVEQYLYFASILFAIMMWVESLMMVVGSIVPNFVMGVIIAGGVEGLAILTAGFYRLPDDLPNPLWKYPCYYISFLTYAFQGSFKNEFEGLTFVWHQNGGTIKVSGRDILTDTWHVQMDHSKWVDLAIMFGMIVVYRILFLVINKIKEKSKPTVRTLHGPKAKTFSRTNMDDL 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04998 632 Gene3D - 6 252 IPR027417 -
Vivi5g04998 632 Pfam ABC-2 type transporter 334 547 IPR013525 GO:0016020|GO:0140359
Vivi5g04998 632 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 8 616 - -
Vivi5g04998 632 Pfam ABC transporter 33 183 IPR003439 GO:0005524
Vivi5g04998 632 Pfam ABC-2 type transporter 215 273 IPR043926 GO:0140359
Vivi5g04998 632 ProSitePatterns ABC transporters family signature. 155 169 IPR017871 GO:0005524|GO:0016887
Vivi5g04998 632 FunFam ABC transporter G family member 11 11 298 - -
Vivi5g04998 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 249 IPR027417 -
Vivi5g04998 632 SMART AAA_5 41 243 IPR003593 GO:0016887
Vivi5g04998 632 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 13 258 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04998 Vivi-Chr5 150585325 150589267 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04998 31 219 Calmodulin-binding Proteins AT2G36910 27.835 8.40e-08 53.9