Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04997 ATGCTGTCAGCTTTAACAGCTGGAGAAACTTTATACTACTCAGCTCAACTTCAATTTCCAAACTCAATGTCCATAGCAGAGAAGAAGAGACAAGCAGATATCACACTCAGAGAAATGGGCCTGCAAGATGCTATTAACACAAGGGTTGGAGGGTATGGTTCTAAGGGCCTAAGTGGAGGACAAAAGAGGAGACTAAGCATTTGCATAGAGATGCTAACACGCCCTAGACTTCTTTTCCTTGATGAACCAACTAGTGGACTTGATAGTGCAGCTTCCTACTATGTTATGAGTAGAATTGCAAGTTTAAGTCTAAGGGATGGTATTCAAAGAACAATTGTTGCATCCATCCATCAGCCGAGTAGTGAAGTTTTTGAACTTTTTGATTACCTTTGTCTTCTTTCTTCTGGAGAGACAGTCTATTTTGGTCCAGCTTCTGAAGCAAATCAGTTTTTTGCTTCAAATGGTTTCCCTTGTCCAACTCTCTATAATCCTTCTGATCACTACTTAAGGATCATAAATAAAGATTTTGATCAGGACATTGAAGAAGGCTTAGGTAAAGGATTTATTACTGAAAAAGCAATTGATGTCCTTGTAAATTCTTATAAAGGGTCTGAAATGAAATTTCAAGTTCAGATTGAGGTGACAAAAATAAGTAAATGTGATTTGGGCGCAATGAGGAATAGGAGGACGCATGCTCTATTTCTGAGTCAATGCATGGTTCTTATAAAAAGATCTTCCCTGCAATTGTATCGTGACATCAGCAACTACTGGTTACGTCTTGTTGTGTTTATTGCAATAGCTATAAGCCTAGGCACCATCTTCTATCAGGTCGGCTCAAGTAAGAGATCTATTCAGGTCAGAGGATCACTACTTTCATTTCTGATGTCTGTCCTAACTTTCATGACACTTATTGGGGGATTCCCGCCCTTGATTGAGGAAATGAAGGTGTTTGAACGAGAGAGAATGAATGGGCACTATGGCATTACTGCCTTTCTCATTGGCAACATATTATCTCCTATTCCTTACATGCTAATGATCTCTCTCATGTCTGGGGTAATAGTGTGTTACCTTTCTGGACTACACAAAGGAGTAGAGCAATATCTATACTTTGCTTCTATCCTATTTGCCATTATGATGTGGGTTGAGAGCCTTATGATGGTTGTGGGAAGTATCTTCCCAAATTTTGTGATGGGAGTTATCATTGCTGGTGGAGTTGAAGGACTTGCAATTTTAACAGGTGGATTCTATCGACTTCCTGATGATCTTCCAAATCCATTATGGAAGTACCCTTGCTACTACATTTCCTTCCTCACATATGCTTTTCAAGGATCATTTAAGAACGAATTTGAAGGCTTAACATTTGTTTGGCATCGAGATGGAGGTACCATAAAAGTTAGTGGTAGAGATATACTAAGTGATACATGGCATGTGCAAATGGGTCACTCTAAGTGGGTTGATCTTGCTATCATGTTTGGAATGATTTTTGTTTATCGTATTCTATTCTTGGTCATCAATAAGATCAAAGAGAAGTCAAAACCTATTGTTCCTACCGTAAATGGAGCCCAAGCAAAAACTTTCTCCATAACCAATATGGATGAACTCTAA 1605 0.3882 MLSALTAGETLYYSAQLQFPNSMSIAEKKRQADITLREMGLQDAINTRVGGYGSKGLSGGQKRRLSICIEMLTRPRLLFLDEPTSGLDSAASYYVMSRIASLSLRDGIQRTIVASIHQPSSEVFELFDYLCLLSSGETVYFGPASEANQFFASNGFPCPTLYNPSDHYLRIINKDFDQDIEEGLGKGFITEKAIDVLVNSYKGSEMKFQVQIEVTKISKCDLGAMRNRRTHALFLSQCMVLIKRSSLQLYRDISNYWLRLVVFIAIAISLGTIFYQVGSSKRSIQVRGSLLSFLMSVLTFMTLIGGFPPLIEEMKVFERERMNGHYGITAFLIGNILSPIPYMLMISLMSGVIVCYLSGLHKGVEQYLYFASILFAIMMWVESLMMVVGSIFPNFVMGVIIAGGVEGLAILTGGFYRLPDDLPNPLWKYPCYYISFLTYAFQGSFKNEFEGLTFVWHRDGGTIKVSGRDILSDTWHVQMGHSKWVDLAIMFGMIFVYRILFLVINKIKEKSKPIVPTVNGAQAKTFSITNMDEL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04997 534 Pfam ABC-2 type transporter 237 449 IPR013525 GO:0016020|GO:0140359
Vivi5g04997 534 Gene3D - 1 153 IPR027417 -
Vivi5g04997 534 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 1 518 - -
Vivi5g04997 534 Pfam ABC-2 type transporter 117 173 IPR043926 GO:0140359
Vivi5g04997 534 Pfam ABC transporter 18 85 IPR003439 GO:0005524
Vivi5g04997 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 159 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04997 Vivi-Chr5 150578864 150582533 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04997 21 146 Calmodulin-binding Proteins AT2G36910 33.333 9.90e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04997 K05681 - gmx:100790102 803.897