Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04995 ATGGATGGTGGTGATGCGGGAGAAAAGGGTGGCATTACTGTGACATGGGAAAACTTGGAGGTCATTGTTACAAAGAATAAAAAACAAATTCTGCATGGACTTACAGGTTATGCCCAGCCTGGGAAGCTTTTGGCTGTAATGGGTCCCTCAGGCAGTGGCAAATCCACACTCCTTGATGCCTTAGCAGGAAGATTGAGATCAGACATACAACAATCGGGGAAGATTTTAATCAATGGAAAAACACAAACACTGGCTTATGGAACATCAGGTTATGTAACACAAGATGATGCTATGCTGTCAGCTTTAACAGCTGGTGAAACTTTATACTACTCAGCTCAACTTCAATTTCCAAACTCAATGTCCATAGCAGAGAAGAAGAGACAAGCAGATATCACACTTAGAGAAATGGGCCTGCAAGATGCTATTAACACAAGGGTTGGAGGGTATGGTTCTAAGGGCCTAAGTGGAGGACAAAAGAGGAGACTAAGCATTTGCATTGAGATTCTAACACGTCCTAGACTTCTTTTTCTTGATGAACCAACTAGTGGACTTGATAGTGCAGCTTCCTACTATGTTATGAGTAGAATTGCAAGTTTAAGTCTAAGGGATGGTATTCAAAGAACAATTGTTGCATCCATCCATCAGCCGAGTAGTGAAGTTGTTGAACTTTTTGATTACCTCTGTCTTCTTTCTTCTGGAGAGACAGTCTATTTTGGTCCAGCTTCTGAAGCAAATCAGTTTTTTGCTTCAAATGGTTTCCCTTGTCCAACTCTCTACAATCCTTCTGATCACTACTTAAGGATCATAAACAAAGATTTTTATCAGGACATTGCAGAAGGCTCAAGTAAAGGATCTATTACTGAAAACGCAATTGATGTCCTTGTAAATTCTTATAAAGGGTCTGAAATGAAATTTCAAGTTCAGATTGAGGTGACAAAAATAAGTAAATGTGATTTGGGCGCAATGAGGAATAGGAGGACACATGCTCTATTTCTGAGTCAATGCATGGTTCTTATAAAAAGATCTTCCCTGCAATTGTATCGTGACATCAGCAACTACTGGTTACGTCTTGTTGTCTTTATTGCAATAGCTATAAGCCTAGGCACCATCTTCTATCAGGTCGGCTCAAGTAAGAGATCTATTCAGGTCAGAGGATCACTACTTTCATTTCTGATGTCTGTCCTAACTTTCATGACACTTATTGGGGGATTCCCGCCGTTGATTGAGGAAATGAAGGTGTTTGAACGGGAGAGAATGAATGGGCACTATAGCATTACTGCTTTTCTCATTGGCAACATATTATCTCCAATTCCTTACATGCTAATGATCTCACTCATTTCTGGAGTAATAGTGTGTTACCTTTCTGGACTACACAAAGGAGTAGAGCAATATCTATACTTTGCTTCTATCCTATTTGCCATTATGATGTGGGCTGAGAGCCTTATGATGGTTGTGGGAAGTATCTTCCCAAATTTTGTGATGGGAGTGATCATTGCTGGTGGAGTTGAAGGACTTGCAATTTTAACAGCTGGATTCTATCGACTTCCTGATGATCTTCCAAATCCATTATGGAAGTACCCTTGCTACTACATTTCCTTCCTCACATATGCTTTTCAAGGATCATTCAAGAATGAATTTGAAGGCTTAACATTTGTTTGGCATCAAGATGGAGGTACCATAAAAGTTAGTGGTAGAGATATACTAAGTGATACATGGCATGTGCAAATGGGTCACTCTAAGTGGGTTGATCTTGCTATCATGTTTGGAATGATTTTTGTTTATCGTATTCTATTCTTGGTCATCAATAAGATCAAAGAGAAGTCAAAACCTATTGTTCCTACCGTAAATGGACCCCAGGCAAAAACTTTCTCCATAACCAATATGGATGAACTCTAA 1896 0.395 MDGGDAGEKGGITVTWENLEVIVTKNKKQILHGLTGYAQPGKLLAVMGPSGSGKSTLLDALAGRLRSDIQQSGKILINGKTQTLAYGTSGYVTQDDAMLSALTAGETLYYSAQLQFPNSMSIAEKKRQADITLREMGLQDAINTRVGGYGSKGLSGGQKRRLSICIEILTRPRLLFLDEPTSGLDSAASYYVMSRIASLSLRDGIQRTIVASIHQPSSEVVELFDYLCLLSSGETVYFGPASEANQFFASNGFPCPTLYNPSDHYLRIINKDFYQDIAEGSSKGSITENAIDVLVNSYKGSEMKFQVQIEVTKISKCDLGAMRNRRTHALFLSQCMVLIKRSSLQLYRDISNYWLRLVVFIAIAISLGTIFYQVGSSKRSIQVRGSLLSFLMSVLTFMTLIGGFPPLIEEMKVFERERMNGHYSITAFLIGNILSPIPYMLMISLISGVIVCYLSGLHKGVEQYLYFASILFAIMMWAESLMMVVGSIFPNFVMGVIIAGGVEGLAILTAGFYRLPDDLPNPLWKYPCYYISFLTYAFQGSFKNEFEGLTFVWHQDGGTIKVSGRDILSDTWHVQMGHSKWVDLAIMFGMIFVYRILFLVINKIKEKSKPIVPTVNGPQAKTFSITNMDEL 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04995 631 ProSitePatterns ABC transporters family signature. 154 168 IPR017871 GO:0005524|GO:0016887
Vivi5g04995 631 Pfam ABC-2 type transporter 334 546 IPR013525 GO:0016020|GO:0140359
Vivi5g04995 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 248 IPR027417 -
Vivi5g04995 631 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 12 614 - -
Vivi5g04995 631 FunFam ABC transporter G family member 11 12 297 - -
Vivi5g04995 631 Gene3D - 14 250 IPR027417 -
Vivi5g04995 631 Pfam ABC-2 type transporter 214 270 IPR043926 GO:0140359
Vivi5g04995 631 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 14 257 IPR003439 GO:0005524
Vivi5g04995 631 Pfam ABC transporter 32 182 IPR003439 GO:0005524
Vivi5g04995 631 SMART AAA_5 40 234 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04995 Vivi-Chr5 150551580 150555484 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04995 29 243 Calmodulin-binding Proteins AT2G36910 31.081 2.49e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04995 K05681 - gmx:100790102 913.679