Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04991 ATGACGTTGATATGGTCGGCGCCGACAACAACGAAGCCGTATGATTTGGATGACATGAAGAAACGGTTGAAGGAAATGGAAGACGAAGCGGCTGCTTTGAGAGAGATGCAGGCCAAGGTCGAGAAAGAAATGGGATCCGCGCAAGATCCCGCTAATGCTTCTGCTAGTCAGGTCAATAGGGAGGAAGTTGATTCTCGATCAATCTTTGTGGGCAATGTGGACTATGCATGTACTCCCGAAGAAGTGCAACAGCATTTTCAGTCGTGTGGAACGGTAAACCGAGTCACCATTCGCACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTAGAATTTGTTGAAGTAGAAGCTGTTCAAGAGGCTCTTTCCCTGAATGAATCTGAACTGCATGGACGGCAACTGAAGGTTACTGCTAAGAGGACCAATGTACCTGGGATGAAACAATTTCGTCCCCGTCGGCCTAGTAATCCTTACATGGGATTTCGAGGCAGAACTCCATATCCACCTCCTTTTGCCTATGCCCCTGCTCCTTATGGATATGGAAAGGTTCCAAGGTTCCGAATGGGGATGCGCTACAGCCCTTACTATTGA 594 0.4781 MTLIWSAPTTTKPYDLDDMKKRLKEMEDEAAALREMQAKVEKEMGSAQDPANASASQVNREEVDSRSIFVGNVDYACTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALSLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYPPPFAYAPAPYGYGKVPRFRMGMRYSPYY 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04991 197 Coils Coil 16 43 - -
Vivi5g04991 197 Gene3D - 9 139 IPR012677 -
Vivi5g04991 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 136 IPR000504 GO:0003723
Vivi5g04991 197 CDD RRM_II_PABPs 67 138 - -
Vivi5g04991 197 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 15 160 - -
Vivi5g04991 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 142 IPR000504 GO:0003723
Vivi5g04991 197 SUPERFAMILY RNA-binding domain, RBD 54 166 IPR035979 GO:0003676
Vivi5g04991 197 SMART rrm1_1 67 138 IPR000504 GO:0003723
Vivi5g04991 197 MobiDBLite consensus disorder prediction 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04991 Vivi-Chr5 150448998 150453937 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04991 67 137 Eukaryotic Initiation Factors Gene Family AT2G36660 34.722 8.83e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04991 K14396 - gmx:100791351 312.768