Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04990 ATGGAAAACGATGACGTTGATATGGTCGGCGCCGACAACAACGAAGCCGATTTGGATGACATGAAGAAACGGTTGAAGGAAATGGAAGACGAAGCGGCTGCTTTGAGAGAGATGCAGGCCAAGGTCGAGAAAGAAATGGGATCCGCGCAAGATCCCGCTAATGCTTCTGCTAGTCAGGTCAATAGGGAGGAAGTTGATTCTCGATCAATCTTTGTGGGCAATGTGGACTATGCATGTACTCCCGAAGAAGTGCAACAGCATTTTCAGTCGTGTGGAACGGTAAACCGAGTCACCATTCGCACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTAGAATTTGTTGAAGTAGAAGCTGTTCAAGAGGCTCTTTCCCTGAATGAATCTGAACTGCATGGACGGCAACTGAAGGTTACTGCTAAGAGGACCAATGTACCTGGGATGAAACAATTTCGTCCCCGTCGGCCTAGTAATCCTTACATGGGATTTCGAGGCAGAACTCCATATCCACCTCCTTTTGCCTATGCCCCTGCTCCTTATGGATATGGAAAGGTTCCAAGGTTCCGAATGGGGATGCGCTACAGCCCTTACTATTGA 600 0.4783 MENDDVDMVGADNNEADLDDMKKRLKEMEDEAAALREMQAKVEKEMGSAQDPANASASQVNREEVDSRSIFVGNVDYACTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALSLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYPPPFAYAPAPYGYGKVPRFRMGMRYSPYY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04990 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Vivi5g04990 199 MobiDBLite consensus disorder prediction 1 20 - -
Vivi5g04990 199 CDD RRM_II_PABPs 69 140 - -
Vivi5g04990 199 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 17 162 - -
Vivi5g04990 199 SMART rrm1_1 69 140 IPR000504 GO:0003723
Vivi5g04990 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Vivi5g04990 199 SUPERFAMILY RNA-binding domain, RBD 56 168 IPR035979 GO:0003676
Vivi5g04990 199 Gene3D - 6 141 IPR012677 -
Vivi5g04990 199 Coils Coil 11 45 - -
Vivi5g04990 199 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04990 Vivi-Chr5 150448998 150453986 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04990 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 34.722 7.54e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04990 K14396 - gmx:100791351 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04990 5 150448998 150453986 Vivi5g05146 5 152359423 152365434 PCT