Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi5g04989 | ATGGAAAACGATGACGTTGATATGGTCGGCGCCGACAACAACGAAGCCCAGGATTTGGATGACATGAAGAAACGGTTGAAGGAAATGGAAGACGAAGCGGCTGCTTTGAGAGAGATGCAGGCCAAGGTCGAGAAAGAAATGGGATCCGCGCAAGATCCCGCTAATGCTTCTGCTAGTCAGGTCAATAGGGAGGAAGTTGATTCTCGATCAATCTTTGTGGGCAATGTGGACTATGCATGTACTCCCGAAGAAGTGCAACAGCATTTTCAGTCGTGTGGAACGGTAAACCGAGTCACCATTCGCACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTAGAATTTGTTGAAGTAGAAGCTGTTCAAGAGGCTCTTTCCCTGAATGAATCTGAACTGCATGGACGGCAACTGAAGGTTACTGCTAAGAGGACCAATGTACCTGGGATGAAACAATTTCGTCCCCGTCGGCCTAGTAATCCTTACATGGGATTTCGAGGCAGAACTCCATATCCACCTCCTTTTGCCTATGCCCCTGCTCCTTATGGATATGGAAAGGTTCCAAGGTTCCGAATGGGGATGCGCTACAGCCCTTACTATTGA | 603 | 0.4793 | MENDDVDMVGADNNEAQDLDDMKKRLKEMEDEAAALREMQAKVEKEMGSAQDPANASASQVNREEVDSRSIFVGNVDYACTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALSLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYPPPFAYAPAPYGYGKVPRFRMGMRYSPYY | 200 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi5g04989 | 200 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 71 | 139 | IPR000504 | GO:0003723 | |
Vivi5g04989 | 200 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Vivi5g04989 | 200 | Gene3D | - | 7 | 142 | IPR012677 | - | |
Vivi5g04989 | 200 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 69 | 145 | IPR000504 | GO:0003723 | |
Vivi5g04989 | 200 | SUPERFAMILY | RNA-binding domain, RBD | 57 | 169 | IPR035979 | GO:0003676 | |
Vivi5g04989 | 200 | Coils | Coil | 12 | 46 | - | - | |
Vivi5g04989 | 200 | SMART | rrm1_1 | 70 | 141 | IPR000504 | GO:0003723 | |
Vivi5g04989 | 200 | MobiDBLite | consensus disorder prediction | 43 | 63 | - | - | |
Vivi5g04989 | 200 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 18 | 163 | - | - | |
Vivi5g04989 | 200 | CDD | RRM_II_PABPs | 70 | 141 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi5g04989 | Vivi-Chr5 | 150448998 | 150453988 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi5g04989 | 70 | 140 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 34.722 | 7.26e-09 | 52.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi5g04989 | K14396 | - | gmx:100791351 | 329.331 |