Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04980 ATGGATAGTTTCTGTTGCTTCAGCTCTGCAGTTGGAGGGCGTTCTTCATGCAACTCTGGCAAAGGTAAAAGCAGTCAGTCGCCGGTCAAATATGGATTTAGCCTCGTTAAAGGGAAAGCCAACCATCCAATGGAAGACTATCACGTAGCAAAATTTGTCCATTTCAAAGGACAAGAGCTAGGACTTTTTGCTATATACGATGGACACCTCGGAGACAGTGTACCGTCATATCTGCAAAAATATCTCTTTTCTAATATCTTGAAGGAAGACGACTTCTGGAACGATCCATTCATGTCCATTTCTAAAGCATATGAGTCAACAGATCAGGCAATTCTTTCTCACAGTCCTGATTTGGGGCGAGGAGGATCAACTGCCGTGACTGCAATTCTCATAAATAATCAAAAACTCTGGGTCGCCAATGTTGGAGATTCACGAGCGGTTCTGTCAAGAGAAGGGGTAGCTGTACAGATGACTACTGATCATGAACCTAATACGGAACGTGGCAGCATTGAGAATAGAGGCGGCTTTGTCTCAAACATGCCAGGAGATGTTGCGAGAGTGAATGGACAGCTTGCAGTTTCTCGAGCATTTGGAGACAAAAACCTCAAAACACACTTGCGATCTGACCCCGACATTCAGTATGCTGATGTTAACCAAGATACCGAGCTTTTGATTCTCGCTAGTGACGGTCTATGGAAGGTAATGGCGAATCAAGAAGCGGTTGATATCGCGAAAAGAATAAAGGATCCACAAAAGGCAGCTAAACAACTAGCTACTGAGGCATTGAACAGAGACAGTAAGGATGATATTTCCTGCGTTGTAGTTCGTTTCAAGGGATGA 840 0.4405 MDSFCCFSSAVGGRSSCNSGKGKSSQSPVKYGFSLVKGKANHPMEDYHVAKFVHFKGQELGLFAIYDGHLGDSVPSYLQKYLFSNILKEDDFWNDPFMSISKAYESTDQAILSHSPDLGRGGSTAVTAILINNQKLWVANVGDSRAVLSREGVAVQMTTDHEPNTERGSIENRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIQYADVNQDTELLILASDGLWKVMANQEAVDIAKRIKDPQKAAKQLATEALNRDSKDDISCVVVRFKG 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04980 279 Pfam Protein phosphatase 2C 39 270 IPR001932 -
Vivi5g04980 279 Gene3D - 14 279 IPR036457 -
Vivi5g04980 279 ProSiteProfiles PPM-type phosphatase domain profile. 30 277 IPR001932 -
Vivi5g04980 279 SUPERFAMILY PP2C-like 25 278 IPR036457 -
Vivi5g04980 279 CDD PP2Cc 29 277 IPR001932 -
Vivi5g04980 279 SMART PP2C_4 26 275 IPR001932 -
Vivi5g04980 279 FunFam Probable protein phosphatase 2C 39 21 278 - -
Vivi5g04980 279 SMART PP2C_SIG_2 41 277 IPR001932 -
Vivi5g04980 279 PANTHER PROTEIN PHOSPHATASE 24 277 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04980 Vivi-Chr5 150338247 150341094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04980 1 278 PP2C-type Phosphatase Gene Family AT1G22280 72.474 6.18e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04980 K17506 - gmx:100801722 514.612