Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04978 ATGGCGGAGCGTGCTTCTCACGGACTGGCTCCTCGACTAGATATTCAGCAGTTACAGTTTGAAGCCCAGCATCGGTGGTTACGTCCTGCAGAAATATTGGAAATTCTTAGTAATTATAAGTTGTTTCAACTCACACCAGAACCGCCTAATAGGCCTCCGAGTGGATCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTCAGAAAGGATGGACACAACTGGAGAAAGAAGAAAGATGGAAAAACTGTGAGGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGACGTGTTACACTGCTACTATGCCCATGGAGAAGAGAATGAAAATTTCCAGAGGCGAAGCTATTGGATGCTTGAACAGGATATGACGAATATAGTATTTGTCCACTACTTGGATGTAAAGATTAACAAGACAAATATTGGTGCAAGTACAGATACTAATGGGGTTACATCAGATTCCCACAAGGGCAGCTCTGTGTCATCTGGATTTCCTGCAAATTCTGTTAACATGCCTTCAGGAAGTGCGGATTCCATGAGCCCAACAAGCACATTAACTTCTTTATGTGAAGAAGCAGATTCAGAGGATATTCATCAAGCAAGCCCGAGATTTCAAACCTTTCACGAGTCGCAAAGTCTGGGGAATGGTCCCCTAATGGGACCAAATCACCTCCCACTTGTTCAAGTGGGTAAATCCAATCCTAGTGATACTACATACATCGAGGGTCAGAGAGCACTCAACATAGCATCCTGGGACAATGGCATGGAGAAATCTGCAGGATTGTATACTGATCCTTCCCCTGTTTTGTCTAATTCTATTCCACCAAGTTCAATGAGCAACTTCCTTGAACAAGAAGATGCTGTCTTTACTGAAGGAAGGGCCTCACAGTCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATACTGGAGATTTTCCTAAGTGGAGCTTTACTCAATCGTTGACTTCGGAATTTGAATCTGATTATTCCGCTGAACTACTGGGAAAAGAAACTAATAATGCATGTCCAGAAATTGGTTTGGACCCATTTTATTTTAATTGTGAACCAAAAGAGCAGCCTGTGCTGCAAAACATGTCAAATGAGCATGCACAATCTCAGGATGCACCGAAATCTGACTTTGAAACTCATGGCGAAGCCAGTGTCAACTATTCCTTGAACATGAAGCGTGCTTTTATGAATGCAGAAGAAAGCCTGAGTAAGGTTGATAGCTTCTCTAGGTGGATGTCTACAGCATTTGCATCGGTGGATGATCTGCACATGCAGTCTTCCCCTGGTATTCCATGGGGCACAGATGAATCTGGGAATGTGATAGATGATACCTCATTGAACCTTTCCCTATCTCAAGACCAGCTGTTTAGCATTCATGATTTTTCACCTAAATGGGCTTATGCTGAATCAGAAATTCAGGTGTTGATTGTTGGAACATTTTTGAAGAGTAAACCAAATGTGGAAACATGTAACTGGTCCTGTATGTTTGGGGAAGTTGAAGTTCCAGCTACGGTTTTAGCTAATGGAATTCTATGCTGTCAAGCTCCACCTCATGAGATTGGACGGGTCCCTTTCTACGTAACCTTTTCCAATAGATTTGCCTGTAGTGAAGTTCGGGAATTTGAGTTCAGAGAGGGCTTCACTAGAAATGTGGATTTGGCAGATTATTTTAACAGCTCTAATGAACTGATGCTTCATTTGCAACTGGAAGAATTGCTTACTTTGAATTCAGTGCATCTTTCAGATCAAGTTTTTGAGGATGATATGGAGAAACAAAACTTGATTCTTAAGCTTATTTCACTGAGAGAGGAAGAGGAATATTCGAGTAATGAAGAGCCAACTGGAGATATGGGTACATCAAAATACATGTTGAAGATGCATATGTTTCACAGGCAGGTTAAGGAAAAGTTGTACTCATGGCTTCTTCACAAAGTAACTGAAACTGGTAAAGGACCTCATGTGATTGGTAAAGATGGGCAAGGTGTATTACATTTAGTTTCTGCTCTTGGTTATGATTGGGCCATAGCACCAATTGTAACTTCTGGAGTTAATATTAATTTCCGCGATGTGAATGGATGGACTGCTCTACACTGGGCTGCATCATGTGGCAGGGAACGAACAGTTGGTCTCCTTGTCTCCATGGGTGCAGCTGCTGGAGCATTGACAGATCCATGTCCAGCATTCCCTTCAGGAAGAACACCTGCAGATCTTGCTTCTAGCTGTGGCCACAAAGGAATATCAGGTTTTCTTGCCGAGTCATTATTAACTAGCCACCTTGAATCACTCACAGTGGCTGATGCAAATGAAGATGGTACAAAAGAAAAGAATGTCGTACAGACGATTTCAGAACGAACTGCGACACCTGTGCTCTGGGGAGATATACCAGATGTTATCTGCCTTAAGGATTCTCTTGATGCTGTCCGCAATGCTACACAAGCTGTTGGTAGAATACATCAAGTATTTAGAATGCAATCATTTCAAAAAAAGCAGTTAGCTCAGTATGACGATGATGATGAGTTTGGATTGTCAGATCAGCAGGCTCTTTCTCTTGTAGCTTCTAAGGCTTGCAAATCTACTCATGGGAAAGGTTCAGCAAATGCCGCCGCAGTACAAATACAGAAAAAGTTCCGTGGCTGGACAAAGAGAAAAGAATTCTTGTTCATTCGTGAAAGAGTTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGAAAGAAGTTTAAACCAATCATTTGGTCTGTGGGAATCCTGGAGAAGGTTGTACTACGGTGGAGGCGCAAGGGCAGTGGTTTACGAGGATTTCGACCAGATGCCGTAAATAATGTCCCCAACCAACCTAACAACAATCTTGTGAAGGAGGATGATTATGATTTTTTCAAGGAAGGGAGGAAACAAAGTGAAGAAAGGTTCCAAAAGGCTCTTTCAAGAGTTCAGTCCATGGTTCAGTATCCAGAAGCTCGGGCTCAGTACAGACGACTGCTAAATGTAGTAGATGATTTCCGCCAAAAGAAGCCATGTAATTCGAGTTTGATGAATTCGGAAGAAGCGGTTGATGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGATAATTTCTTACCTATAGCATTCGATTGA 3144 0.4202 MAERASHGLAPRLDIQQLQFEAQHRWLRPAEILEILSNYKLFQLTPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEQDMTNIVFVHYLDVKINKTNIGASTDTNGVTSDSHKGSSVSSGFPANSVNMPSGSADSMSPTSTLTSLCEEADSEDIHQASPRFQTFHESQSLGNGPLMGPNHLPLVQVGKSNPSDTTYIEGQRALNIASWDNGMEKSAGLYTDPSPVLSNSIPPSSMSNFLEQEDAVFTEGRASQSLQSNWQIPFEDNTGDFPKWSFTQSLTSEFESDYSAELLGKETNNACPEIGLDPFYFNCEPKEQPVLQNMSNEHAQSQDAPKSDFETHGEASVNYSLNMKRAFMNAEESLSKVDSFSRWMSTAFASVDDLHMQSSPGIPWGTDESGNVIDDTSLNLSLSQDQLFSIHDFSPKWAYAESEIQVLIVGTFLKSKPNVETCNWSCMFGEVEVPATVLANGILCCQAPPHEIGRVPFYVTFSNRFACSEVREFEFREGFTRNVDLADYFNSSNELMLHLQLEELLTLNSVHLSDQVFEDDMEKQNLILKLISLREEEEYSSNEEPTGDMGTSKYMLKMHMFHRQVKEKLYSWLLHKVTETGKGPHVIGKDGQGVLHLVSALGYDWAIAPIVTSGVNINFRDVNGWTALHWAASCGRERTVGLLVSMGAAAGALTDPCPAFPSGRTPADLASSCGHKGISGFLAESLLTSHLESLTVADANEDGTKEKNVVQTISERTATPVLWGDIPDVICLKDSLDAVRNATQAVGRIHQVFRMQSFQKKQLAQYDDDDEFGLSDQQALSLVASKACKSTHGKGSANAAAVQIQKKFRGWTKRKEFLFIRERVVKIQAHVRGHQVRKKFKPIIWSVGILEKVVLRWRRKGSGLRGFRPDAVNNVPNQPNNNLVKEDDYDFFKEGRKQSEERFQKALSRVQSMVQYPEARAQYRRLLNVVDDFRQKKPCNSSLMNSEEAVDGVEDLIDIDMLLDDDNFLPIAFD 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04978 1047 ProSiteProfiles IQ motif profile. 870 899 IPR000048 GO:0005515
Vivi5g04978 1047 SUPERFAMILY E set domains 463 549 IPR014756 -
Vivi5g04978 1047 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Vivi5g04978 1047 SMART CG_1_2 18 136 IPR005559 GO:0003677
Vivi5g04978 1047 ProSiteProfiles Ankyrin repeat profile. 696 728 IPR002110 GO:0005515
Vivi5g04978 1047 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Vivi5g04978 1047 Gene3D - 870 916 - -
Vivi5g04978 1047 SMART iq_5 892 914 IPR000048 GO:0005515
Vivi5g04978 1047 SMART iq_5 869 891 IPR000048 GO:0005515
Vivi5g04978 1047 Gene3D Immunoglobulins 456 551 IPR013783 -
Vivi5g04978 1047 FunFam Calmodulin-binding transcription activator 2 869 917 - -
Vivi5g04978 1047 SUPERFAMILY Ankyrin repeat 647 756 IPR036770 -
Vivi5g04978 1047 Pfam IQ calmodulin-binding motif 896 914 IPR000048 GO:0005515
Vivi5g04978 1047 Pfam IQ calmodulin-binding motif 872 890 IPR000048 GO:0005515
Vivi5g04978 1047 Pfam IPT/TIG domain 463 536 IPR002909 -
Vivi5g04978 1047 ProSiteProfiles IQ motif profile. 893 917 IPR000048 GO:0005515
Vivi5g04978 1047 FunFam Calmodulin-binding transcription activator 2 456 552 - -
Vivi5g04978 1047 MobiDBLite consensus disorder prediction 146 184 - -
Vivi5g04978 1047 Gene3D - 570 775 IPR036770 -
Vivi5g04978 1047 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1009 - -
Vivi5g04978 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 872 920 IPR027417 -
Vivi5g04978 1047 SMART ANK_2a 735 764 IPR002110 GO:0005515
Vivi5g04978 1047 SMART ANK_2a 696 725 IPR002110 GO:0005515
Vivi5g04978 1047 ProSiteProfiles Ankyrin repeat region circular profile. 696 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04978 Vivi-Chr5 150305707 150313318 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04978 1 1028 CAMTA Transcription Factor Family AT5G64220 50.470 0.0 996
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vivi5g04978 CG-1 3.9e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04978 K21596 - gmx:100795682 1526.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04977 5 150305707 150313318 Vivi5g04978 5 150305707 150313318 PCT