Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04977 ATGGCGGAGCGTGCTTCTCACGGACTGGCTCCTCGACTAGATATTCAGCAGTTACAGTTTGAAGCCCAGCATCGGTGGTTACGTCCTGCAGAAATATTGGAAATTCTTAGTAATTATAAGTTGTTTCAACTCACACCAGAACCGCCTAATAGGCCTCCGAGTGGATCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTCAGAAAGGATGGACACAACTGGAGAAAGAAGAAAGATGGAAAAACTGTGAGGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGACGTGTTACACTGCTACTATGCCCATGGAGAAGAGAATGAAAATTTCCAGAGGCGAAGCTATTGGATGCTTGAACAGGATATGACGAATATAGTATTTGTCCACTACTTGGATGTAAAGATTAACAAGACAAATATTGGTGCAAGTACAGATACTAATGGGGTTACATCAGATTCCCACAAGGGCAGCTCTGTGTCATCTGGATTTCCTGCAAATTCTGTTAACATGCCTTCAGGAAGTGCGGATTCCATGAGCCCAACAAGCACATTAACTTCTTTATGTGAAGAAGCAGATTCAGAGGATATTCATCAAGCAAGCCCGAGATTTCAAACCTTTCACGAGTCGCAAAGTCTGGGGAATGGTCCCCTAATGGGTGATCATGGCCAGTTATCGATTTCAGGACCAAATCACCTCCCACTTGTTCAAGTGGGTAAATCCAATCCTAGTGATACTACATACATCGAGGGTCAGAGAGCACTCAACATAGCATCCTGGGACAATGGCATGGAGAAATCTGCAGGATTGTATACTGATCCTTCCCCTGTTTTGTCTAATTCTATTCCACCAAGTTCAATGAGCAACTTCCTTGAACAAGAAGATGCTGTCTTTACTGAAGGAAGGGCCTCACAGTCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATACTGGAGATTTTCCTAAGTGGAGCTTTACTCAATCGTTGACTTCGGAATTTGAATCTGATTATTCCGCTGAACTACTGGGAAAAGAAACTAATAATGCATGTCCAGAAATTGGTTTGGACCCATTTTATTTTAATTGTGAACCAAAAGAGCAGCCTGTGCTGCAAAACATGTCAAATGAGCATGCACAATCTCAGGATGCACCGAAATCTGACTTTGAAACTCATGGCGAAGCCAGTGTCAACTATTCCTTGAACATGAAGCGTGCTTTTATGAATGCAGAAGAAAGCCTGAGTAAGGTTGATAGCTTCTCTAGGTGGATGTCTACAGCATTTGCATCGGTGGATGATCTGCACATGCAGTCTTCCCCTGGTATTCCATGGGGCACAGATGAATCTGGGAATGTGATAGATGATACCTCATTGAACCTTTCCCTATCTCAAGACCAGCTGTTTAGCATTCATGATTTTTCACCTAAATGGGCTTATGCTGAATCAGAAATTCAGGTGTTGATTGTTGGAACATTTTTGAAGAGTAAACCAAATGTGGAAACATGTAACTGGTCCTGTATGTTTGGGGAAGTTGAAGTTCCAGCTACGGTTTTAGCTAATGGAATTCTATGCTGTCAAGCTCCACCTCATGAGATTGGACGGGTCCCTTTCTACGTAACCTTTTCCAATAGATTTGCCTGTAGTGAAGTTCGGGAATTTGAGTTCAGAGAGGGCTTCACTAGAAATGTGGATTTGGCAGATTATTTTAACAGCTCTAATGAACTGATGCTTCATTTGCAACTGGAAGAATTGCTTACTTTGAATTCAGTGCATCTTTCAGATCAAGTTTTTGAGGATGATATGGAGAAACAAAACTTGATTCTTAAGCTTATTTCACTGAGAGAGGAAGAGGAATATTCGAGTAATGAAGAGCCAACTGGAGATATGGGTACATCAAAATACATGTTGAAGATGCATATGTTTCACAGGCAGGTTAAGGAAAAGTTGTACTCATGGCTTCTTCACAAAGTAACTGAAACTGGTAAAGGACCTCATGTGATTGGTAAAGATGGGCAAGGTGTATTACATTTAGTTTCTGCTCTTGGTTATGATTGGGCCATAGCACCAATTGTAACTTCTGGAGTTAATATTAATTTCCGCGATGTGAATGGATGGACTGCTCTACACTGGGCTGCATCATGTGGCAGGGAACGAACAGTTGGTCTCCTTGTCTCCATGGGTGCAGCTGCTGGAGCATTGACAGATCCATGTCCAGCATTCCCTTCAGGAAGAACACCTGCAGATCTTGCTTCTAGCTGTGGCCACAAAGGAATATCAGGTTTTCTTGCCGAGTCATTATTAACTAGCCACCTTGAATCACTCACAGTGGCTGATGCAAATGAAGATGGTACAAAAGAAAAGAATGTCGTACAGACGATTTCAGAACGAACTGCGACACCTGTGCTCTGGGGAGATATACCAGATGTTATCTGCCTTAAGGATTCTCTTGATGCTGTCCGCAATGCTACACAAGCTGTTGGTAGAATACATCAAGTATTTAGAATGCAATCATTTCAAAAAAAGCAGTTAGCTCAGTATGACGATGATGATGAGTTTGGATTGTCAGATCAGCAGGCTCTTTCTCTTGTAGCTTCTAAGGCTTGCAAATCTACTCATGGGAAAGGTTCAGCAAATGCCGCCGCAGTACAAATACAGAAAAAGTTCCGTGGCTGGACAAAGAGAAAAGAATTCTTGTTCATTCGTGAAAGAGTTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGAAAGAAGTTTAAACCAATCATTTGGTCTGTGGGAATCCTGGAGAAGGTTGTACTACGGTGGAGGCGCAAGGGCAGTGGTTTACGAGGATTTCGACCAGATGCCGTAAATAATGTCCCCAACCAACCTAACAACAATCTTGTGAAGGAGGATGATTATGATTTTTTCAAGGAAGGGAGGAAACAAAGTGAAGAAAGGTTCCAAAAGGCTCTTTCAAGAGTTCAGTCCATGGTTCAGTATCCAGAAGCTCGGGCTCAGTACAGACGACTGCTAAATGTAGTAGATGATTTCCGCCAAAAGAAGCCATGTAATTCGAGTTTGATGAATTCGGAAGAAGCGGTTGATGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGATAATTTCTTACCTATAGCATTCGATTGA 3171 0.4204 MAERASHGLAPRLDIQQLQFEAQHRWLRPAEILEILSNYKLFQLTPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEQDMTNIVFVHYLDVKINKTNIGASTDTNGVTSDSHKGSSVSSGFPANSVNMPSGSADSMSPTSTLTSLCEEADSEDIHQASPRFQTFHESQSLGNGPLMGDHGQLSISGPNHLPLVQVGKSNPSDTTYIEGQRALNIASWDNGMEKSAGLYTDPSPVLSNSIPPSSMSNFLEQEDAVFTEGRASQSLQSNWQIPFEDNTGDFPKWSFTQSLTSEFESDYSAELLGKETNNACPEIGLDPFYFNCEPKEQPVLQNMSNEHAQSQDAPKSDFETHGEASVNYSLNMKRAFMNAEESLSKVDSFSRWMSTAFASVDDLHMQSSPGIPWGTDESGNVIDDTSLNLSLSQDQLFSIHDFSPKWAYAESEIQVLIVGTFLKSKPNVETCNWSCMFGEVEVPATVLANGILCCQAPPHEIGRVPFYVTFSNRFACSEVREFEFREGFTRNVDLADYFNSSNELMLHLQLEELLTLNSVHLSDQVFEDDMEKQNLILKLISLREEEEYSSNEEPTGDMGTSKYMLKMHMFHRQVKEKLYSWLLHKVTETGKGPHVIGKDGQGVLHLVSALGYDWAIAPIVTSGVNINFRDVNGWTALHWAASCGRERTVGLLVSMGAAAGALTDPCPAFPSGRTPADLASSCGHKGISGFLAESLLTSHLESLTVADANEDGTKEKNVVQTISERTATPVLWGDIPDVICLKDSLDAVRNATQAVGRIHQVFRMQSFQKKQLAQYDDDDEFGLSDQQALSLVASKACKSTHGKGSANAAAVQIQKKFRGWTKRKEFLFIRERVVKIQAHVRGHQVRKKFKPIIWSVGILEKVVLRWRRKGSGLRGFRPDAVNNVPNQPNNNLVKEDDYDFFKEGRKQSEERFQKALSRVQSMVQYPEARAQYRRLLNVVDDFRQKKPCNSSLMNSEEAVDGVEDLIDIDMLLDDDNFLPIAFD 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04977 1056 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Vivi5g04977 1056 FunFam Calmodulin-binding transcription activator 2 465 561 - -
Vivi5g04977 1056 SUPERFAMILY Ankyrin repeat 656 765 IPR036770 -
Vivi5g04977 1056 SMART ANK_2a 744 773 IPR002110 GO:0005515
Vivi5g04977 1056 SMART ANK_2a 705 734 IPR002110 GO:0005515
Vivi5g04977 1056 SMART iq_5 901 923 IPR000048 GO:0005515
Vivi5g04977 1056 SMART iq_5 878 900 IPR000048 GO:0005515
Vivi5g04977 1056 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Vivi5g04977 1056 ProSiteProfiles Ankyrin repeat profile. 705 737 IPR002110 GO:0005515
Vivi5g04977 1056 SMART CG_1_2 18 136 IPR005559 GO:0003677
Vivi5g04977 1056 FunFam Calmodulin-binding transcription activator 2 878 926 - -
Vivi5g04977 1056 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1018 - -
Vivi5g04977 1056 SUPERFAMILY E set domains 472 558 IPR014756 -
Vivi5g04977 1056 Gene3D - 579 784 IPR036770 -
Vivi5g04977 1056 ProSiteProfiles Ankyrin repeat region circular profile. 705 730 - -
Vivi5g04977 1056 Gene3D Immunoglobulins 465 560 IPR013783 -
Vivi5g04977 1056 Pfam IPT/TIG domain 472 545 IPR002909 -
Vivi5g04977 1056 MobiDBLite consensus disorder prediction 146 184 - -
Vivi5g04977 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 881 929 IPR027417 -
Vivi5g04977 1056 ProSiteProfiles IQ motif profile. 902 926 IPR000048 GO:0005515
Vivi5g04977 1056 Gene3D - 879 925 - -
Vivi5g04977 1056 Pfam IQ calmodulin-binding motif 881 899 IPR000048 GO:0005515
Vivi5g04977 1056 Pfam IQ calmodulin-binding motif 905 923 IPR000048 GO:0005515
Vivi5g04977 1056 ProSiteProfiles IQ motif profile. 879 908 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04977 Vivi-Chr5 150305707 150313318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04977 1 1037 CAMTA Transcription Factor Family AT5G64220 50.660 0.0 994
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vivi5g04977 CG-1 3.9e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04977 K21596 - gmx:100795682 1545.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04977 5 150305707 150313318 Vivi5g04978 5 150305707 150313318 PCT