Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04975 ATGGATTCTGCGGTCTCCGTCACCACGACGGCGCAGATGGTACTTTTCAGAGCACTCCACCGCCATTTATCCCGACCACTTCATCGCCCGCTCCTCCGCCGAAAATTTAAATTCGCTGTTAATTCCTACAACAATCGCTTCCGCATTCCGTGTTCCTCCACTTCTGTGCCGTTATCGCCCTCGCTCTATACTCTCCACGCGTTGCTCTCACGAACGTCGTGCCGTACGCGTTGCATTTCGAGCTCCGCTGCTTCCTTTGCTTCTTCCGGTGGCGGTGGAAATGGAGGTGCTGGAGGTGGAAATGGAGGAGGAGGAGGTGGTGGTTCTGGCGGCGAGTTTGGAGATGTCAGCATCAAATTGATTGGAGATACGGCTCAAGAGCTTTCAACTCTTTCACCCGATGCTATTATTCTTGATGTTTCGGGAATGGTATGCGGAGGATGTGCAGCGTCTGTGAAAAGGATTCTGGAAAGTCAACCACAAGTCTCATCTGTTAGTGTAAATTTAACAACCGAAACAGCAATAGTCTGGCCTGTATCTGAAGCAAAAACTGCACCAAATTGGCAAAAGCAATTAGGGAAGACACTTGCAGAACATTTAACTAGCAGTGGTTTCAATTCTTGCCTTCGAGATTCAACAAGAGAAAATTTCCTACAAATGTTTGAAAGAAAGATGGAAGAAAGAAATAAACAATTAAAAGAAAGTGGTCGTGAGCTAGCTGTTTCTTGGGCTCTTTGTGCTGCGTGTCTTGTTGGCCATCTCTCCCATCTCTTTGCAGCAAAGGCACCATGGCTTCATGCATTTCATTCCGTCGGGTTTCATGTATCCTTGTGTTTGCTTACATTACTCGGTCCTGGCCGCCAACTTATCCTTGACGGCTTAAAAAGCCTTTTTAAAAGGGCGCCAAACATGAACAGCTTAGTTGGTCTTGGGGCTTTGTCATCATTCACAGTCAGTTCATTTGCTGTTTTGCTGCCGAAATTGGGTTGGAAGGCATTTTTTGAGGAACCTATCATGCTGATTGCATTTGTTTTGTTGGGAAGGAACCTTGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGACAGGACTTCTTAGCATATTGCCATCTAAAGCTCGCCTTCTAGTTAATAATGGGGAAACAGAGGTTGCCTCAGTTGTTGAAGTTCCTTCTGACAGTCTTTCTGTTGAAGACCAAATTATCATATTACCCGGAGATCGTATTCCAGCTGATGGAATTGTGAGGGCTGGTAGAAGTACTGTAGATGAATCAAGTTTCACTGGGGAGCCGCTGCCAGTAACAAAAGAACTTGGGAGTGAAGTTGCAGCTGGAAGTATAAATCTAAATGGAACTCTTACAATAGAGGTGCGGAGACCAGGTGGTGAGACTGCTATAGGAGACATTATTCGTCTAGTTGAAGAGGCACAAAGCAGAGAGGCTCCAGTACAACGGTTGGCTGACAAGGTAGCAGGATACTTCACGTATGGAGTAATAGGAGTTTCTGTTACAACATTTACGTTTTGGAGTGTATTTGGCTCACAAATTATACCTTCTGCTGTATATCAAGGAAGTACAGTTTCACTGGCTTTGCAGCTTGCATGTAGTGTTCTGGTTATCGCGTGTCCGTGTGCACTTGGGTTAGCCACACCTACTGCTGTGCTGGTTGGAACTTCTCTGGGGGCTAAAAAAGGATTACTTTTGCGTGGTGGAAATATTCTAGAGAAGTTTGCCATGGTAAACACTGTCGTGTTTGACAAAACAGGGACCCTCACGATTGGTAAACCCGTTGTGACAAAGATTGTCACTCCCACATGCACAGAAAATGCAAATTCAAGCCAAACTAAAATAAATGCTTTGTCTGATATTGAAGTTCTGAGGTTAGCAGCTGCTGTAGAATCTAATTCAGTACATCCAGTTGGGAAAGCAATTGTGGATGCTGCTCAAGCAGTTAATTGTCATGACGCCAAGGTAGTAGATGAAACATTCCTGGAAGAACCTGGATCCGGTGTTGTTGCAACTGTAAATAACAAAAAGGTTTCGGTTGGGACATTGGAATGGATAACCAGACATGGAGTTAACAACAGTATACATCAAGAAGCAGAGTATAAAAACCAATCATGTGTCTATGTTGGAGTTGATAATACTTTGGCTGGCCAGATTTATTTTGAAGACGAGATAAGGAAAGATGCAAGACATGTTATTGATACATTATCTAAGCAAGATATTGGTGTCTACATGCTGTCTGGAGACAAGAGAAATGCAGCTGAATATGTTGCATCTCTTGTTGGGATTCCCAAAGCGAAGGTGCTATCTGAAGTGAAACCAGAGGATAAAAACAACTTCATAAAGGAACTTCAAAAAGATAAGAAAGTTGTAGCTATGGTTGGGGATGGAATTAACGATGCAGCTGCCCTGGCTTCTTCACATATAGGTATTGCATTGGGTGGAGGTGTTGGAGCTGCCAGTGAAGTGTCTTCTATTGTATTGATGCACAACCATCTCTCTCAGCTGCTTGATGCTTTGGAGCTTAGCAGGCTAACCATGAATACTGTAAAGCAAAATCTTTGGTGGGCTTTTGTATACAATATTGTAGGGATTCCAATTGCAGCTGGAGTGTTATTTCCTGTAAATGGTACCATGCTGACTCCATCCATTGCAGGGGCTCTCATGGGGTTGAGTTCTATCGGTGTAATGACGAACTCATTACTTCTGAGATTCAAGTTTTCCTTAAAGCAAAATCAAATACATGGCTCATTGCCAAAGACCAAAACCTATGTTGAATCTGATCTGGCTCGCCGAAACAAGAAAATAAAGTATTCAAATTAG 2829 0.4344 MDSAVSVTTTAQMVLFRALHRHLSRPLHRPLLRRKFKFAVNSYNNRFRIPCSSTSVPLSPSLYTLHALLSRTSCRTRCISSSAASFASSGGGGNGGAGGGNGGGGGGGSGGEFGDVSIKLIGDTAQELSTLSPDAIILDVSGMVCGGCAASVKRILESQPQVSSVSVNLTTETAIVWPVSEAKTAPNWQKQLGKTLAEHLTSSGFNSCLRDSTRENFLQMFERKMEERNKQLKESGRELAVSWALCAACLVGHLSHLFAAKAPWLHAFHSVGFHVSLCLLTLLGPGRQLILDGLKSLFKRAPNMNSLVGLGALSSFTVSSFAVLLPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSILPSKARLLVNNGETEVASVVEVPSDSLSVEDQIIILPGDRIPADGIVRAGRSTVDESSFTGEPLPVTKELGSEVAAGSINLNGTLTIEVRRPGGETAIGDIIRLVEEAQSREAPVQRLADKVAGYFTYGVIGVSVTTFTFWSVFGSQIIPSAVYQGSTVSLALQLACSVLVIACPCALGLATPTAVLVGTSLGAKKGLLLRGGNILEKFAMVNTVVFDKTGTLTIGKPVVTKIVTPTCTENANSSQTKINALSDIEVLRLAAAVESNSVHPVGKAIVDAAQAVNCHDAKVVDETFLEEPGSGVVATVNNKKVSVGTLEWITRHGVNNSIHQEAEYKNQSCVYVGVDNTLAGQIYFEDEIRKDARHVIDTLSKQDIGVYMLSGDKRNAAEYVASLVGIPKAKVLSEVKPEDKNNFIKELQKDKKVVAMVGDGINDAAALASSHIGIALGGGVGAASEVSSIVLMHNHLSQLLDALELSRLTMNTVKQNLWWAFVYNIVGIPIAAGVLFPVNGTMLTPSIAGALMGLSSIGVMTNSLLLRFKFSLKQNQIHGSLPKTKTYVESDLARRNKKIKYSN 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04975 942 NCBIfam HAD-IC family P-type ATPase 377 605 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi5g04975 942 NCBIfam HAD-IC family P-type ATPase 630 875 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi5g04975 942 FunFam Copper-transporting ATPase 1, putative 355 477 - -
Vivi5g04975 942 Coils Coil 218 238 - -
Vivi5g04975 942 ProSiteProfiles Heavy-metal-associated domain profile. 134 201 IPR006121 GO:0046872
Vivi5g04975 942 FunFam Copper-transporting ATPase PAA1, chloroplastic 134 209 - -
Vivi5g04975 942 SUPERFAMILY HMA, heavy metal-associated domain 136 181 IPR036163 GO:0046872
Vivi5g04975 942 SUPERFAMILY Calcium ATPase, transduction domain A 387 473 IPR008250 -
Vivi5g04975 942 Gene3D - 135 211 - -
Vivi5g04975 942 SUPERFAMILY Calcium ATPase, transmembrane domain M 338 875 IPR023298 -
Vivi5g04975 942 PRINTS Copper-transporting ATPase signature 289 308 - -
Vivi5g04975 942 PRINTS Copper-transporting ATPase signature 869 883 - -
Vivi5g04975 942 PRINTS Copper-transporting ATPase signature 496 510 - -
Vivi5g04975 942 PRINTS Copper-transporting ATPase signature 337 356 - -
Vivi5g04975 942 PRINTS Copper-transporting ATPase signature 773 790 - -
Vivi5g04975 942 Gene3D - 595 727 IPR023299 GO:0000166
Vivi5g04975 942 NCBIfam copper-translocating P-type ATPase 286 906 - -
Vivi5g04975 942 Pfam Heavy-metal-associated domain 138 182 IPR006121 GO:0046872
Vivi5g04975 942 SFLD Haloacid Dehalogenase 567 846 - -
Vivi5g04975 942 Gene3D - 575 846 IPR023214 -
Vivi5g04975 942 Gene3D - 354 477 - -
Vivi5g04975 942 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Vivi5g04975 942 PRINTS P-type cation-transporting ATPase superfamily signature 584 598 - -
Vivi5g04975 942 PRINTS P-type cation-transporting ATPase superfamily signature 741 751 - -
Vivi5g04975 942 PRINTS P-type cation-transporting ATPase superfamily signature 819 831 - -
Vivi5g04975 942 PRINTS P-type cation-transporting ATPase superfamily signature 796 815 - -
Vivi5g04975 942 MobiDBLite consensus disorder prediction 85 108 - -
Vivi5g04975 942 CDD P-type_ATPase_Cu-like 237 907 - -
Vivi5g04975 942 PANTHER ATP7, ISOFORM B 132 907 - -
Vivi5g04975 942 FunFam Copper-transporting ATPase PAA1 chloroplastic 595 727 - -
Vivi5g04975 942 Pfam haloacid dehalogenase-like hydrolase 580 808 - -
Vivi5g04975 942 CDD HMA 138 194 IPR006121 GO:0046872
Vivi5g04975 942 ProSitePatterns Heavy-metal-associated domain. 140 169 IPR017969 GO:0046872
Vivi5g04975 942 FunFam Copper-transporting ATPase PAA1 chloroplastic 712 863 - -
Vivi5g04975 942 NCBIfam heavy metal translocating P-type ATPase 304 905 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vivi5g04975 942 NCBIfam cadmium family heavy metal-translocating P-type ATPase 336 886 - -
Vivi5g04975 942 ProSitePatterns E1-E2 ATPases phosphorylation site. 586 592 IPR018303 -
Vivi5g04975 942 SUPERFAMILY HAD-like 582 903 IPR036412 -
Vivi5g04975 942 SFLD p-type atpase 567 846 IPR044492 -
Vivi5g04975 942 Pfam E1-E2 ATPase 368 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04975 Vivi-Chr5 150258868 150272733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04975 286 906 Primary Pumps ATPases AT1G63440 39.752 8.71e-126 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04975 K17686 - gmx:100796210 1399.42