Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi5g04974 | ATGTCTCACTTCGGAAGGTCAGGCCCCCCAGACATCGCCGATACCTACTCTCTCCTCGTCCTGAACATCACTTTTCGTACAACCGCCGACGACCTATTTCCGCTCTTTGATAAGTACGGTAAGGTCGTTGACATCTTCATCCCCAAAGATCGAAGAACTGGTGAGTCGAGAGGTTTTGCTTTTGTTCGTTACAAGTATGCTGATGAAGCTTCCAAGGCTGTTGATAGGCTCGACGGAAGAATGGTTGATGGTCGTGAAATAACCGTCCAGTTTGCAAAATATGGACCTAATGCTGAGAGAATTCAGAAAGGAAGGATTATTGAAACATCTCCGAGATCAAAGACCTCGAGGAGCCGCAGTCCCAGCAGGAGAAGGCATCGTGATGATTACAGAGACAAGGATTATAGGAGGAGAAGTCGCAGCAGGAGTTATGACAGAAATGAACGTGACAGGTATCGCGGGAGAGACAGGGACAGTCGTCGCCGAAGCAGAAGTCGTAGTGCTAGTCCTGGTTACAGGGGCCGTGGGAGGGGGCGCCATGATGACGAGCGTCGTAGTAGAAGCCGGAGTAGATCAGTGGACAGCCGCTCCCCTACACGGCGCAGTCCTAGTCCTAGAAAGAGCCCTTCTCCTAATAAGAGTATTTCCCCTCAAAGGAGTGCTTCCCCCAGGAAAAGTCCACGTCGTGTAAGTCCTGATAATCGTAGCCGTGATGGAAGGTCTCTTACGCCTCGCAGTGTCTCGCCACGAGGTCGCCCTGATGCTTCCCGAAGCCCATCTCCTCGAAATTCAAATGGTGATGAATAA | 807 | 0.5105 | MSHFGRSGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIETSPRSKTSRSRSPSRRRHRDDYRDKDYRRRSRSRSYDRNERDRYRGRDRDSRRRSRSRSASPGYRGRGRGRHDDERRSRSRSRSVDSRSPTRRSPSPRKSPSPNKSISPQRSASPRKSPRRVSPDNRSRDGRSLTPRSVSPRGRPDASRSPSPRNSNGDE | 268 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi5g04974 | 268 | MobiDBLite | consensus disorder prediction | 197 | 225 | - | - | |
Vivi5g04974 | 268 | MobiDBLite | consensus disorder prediction | 100 | 268 | - | - | |
Vivi5g04974 | 268 | SUPERFAMILY | RNA-binding domain, RBD | 9 | 102 | IPR035979 | GO:0003676 | |
Vivi5g04974 | 268 | MobiDBLite | consensus disorder prediction | 226 | 240 | - | - | |
Vivi5g04974 | 268 | SMART | rrm1_1 | 17 | 90 | IPR000504 | GO:0003723 | |
Vivi5g04974 | 268 | MobiDBLite | consensus disorder prediction | 174 | 196 | - | - | |
Vivi5g04974 | 268 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 16 | 94 | IPR000504 | GO:0003723 | |
Vivi5g04974 | 268 | FunFam | Serine/arginine-rich splicing factor SC35 | 4 | 103 | - | - | |
Vivi5g04974 | 268 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 18 | 88 | IPR000504 | GO:0003723 | |
Vivi5g04974 | 268 | Gene3D | - | 4 | 106 | IPR012677 | - | |
Vivi5g04974 | 268 | MobiDBLite | consensus disorder prediction | 122 | 165 | - | - | |
Vivi5g04974 | 268 | CDD | RRM_SRSF2_SRSF8 | 18 | 90 | - | - | |
Vivi5g04974 | 268 | PANTHER | GLYCINE-RICH RNA-BINDING PROTEIN RZ1A | 14 | 237 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi5g04974 | Vivi-Chr5 | 150237752 | 150239885 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi5g04974 | 14 | 92 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 34.177 | 4.64e-09 | 54.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi5g04974 | K12891 | - | twl:119983878 | 261.922 |