Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04974 ATGTCTCACTTCGGAAGGTCAGGCCCCCCAGACATCGCCGATACCTACTCTCTCCTCGTCCTGAACATCACTTTTCGTACAACCGCCGACGACCTATTTCCGCTCTTTGATAAGTACGGTAAGGTCGTTGACATCTTCATCCCCAAAGATCGAAGAACTGGTGAGTCGAGAGGTTTTGCTTTTGTTCGTTACAAGTATGCTGATGAAGCTTCCAAGGCTGTTGATAGGCTCGACGGAAGAATGGTTGATGGTCGTGAAATAACCGTCCAGTTTGCAAAATATGGACCTAATGCTGAGAGAATTCAGAAAGGAAGGATTATTGAAACATCTCCGAGATCAAAGACCTCGAGGAGCCGCAGTCCCAGCAGGAGAAGGCATCGTGATGATTACAGAGACAAGGATTATAGGAGGAGAAGTCGCAGCAGGAGTTATGACAGAAATGAACGTGACAGGTATCGCGGGAGAGACAGGGACAGTCGTCGCCGAAGCAGAAGTCGTAGTGCTAGTCCTGGTTACAGGGGCCGTGGGAGGGGGCGCCATGATGACGAGCGTCGTAGTAGAAGCCGGAGTAGATCAGTGGACAGCCGCTCCCCTACACGGCGCAGTCCTAGTCCTAGAAAGAGCCCTTCTCCTAATAAGAGTATTTCCCCTCAAAGGAGTGCTTCCCCCAGGAAAAGTCCACGTCGTGTAAGTCCTGATAATCGTAGCCGTGATGGAAGGTCTCTTACGCCTCGCAGTGTCTCGCCACGAGGTCGCCCTGATGCTTCCCGAAGCCCATCTCCTCGAAATTCAAATGGTGATGAATAA 807 0.5105 MSHFGRSGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIETSPRSKTSRSRSPSRRRHRDDYRDKDYRRRSRSRSYDRNERDRYRGRDRDSRRRSRSRSASPGYRGRGRGRHDDERRSRSRSRSVDSRSPTRRSPSPRKSPSPNKSISPQRSASPRKSPRRVSPDNRSRDGRSLTPRSVSPRGRPDASRSPSPRNSNGDE 268
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04974 268 MobiDBLite consensus disorder prediction 197 225 - -
Vivi5g04974 268 MobiDBLite consensus disorder prediction 100 268 - -
Vivi5g04974 268 SUPERFAMILY RNA-binding domain, RBD 9 102 IPR035979 GO:0003676
Vivi5g04974 268 MobiDBLite consensus disorder prediction 226 240 - -
Vivi5g04974 268 SMART rrm1_1 17 90 IPR000504 GO:0003723
Vivi5g04974 268 MobiDBLite consensus disorder prediction 174 196 - -
Vivi5g04974 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Vivi5g04974 268 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Vivi5g04974 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Vivi5g04974 268 Gene3D - 4 106 IPR012677 -
Vivi5g04974 268 MobiDBLite consensus disorder prediction 122 165 - -
Vivi5g04974 268 CDD RRM_SRSF2_SRSF8 18 90 - -
Vivi5g04974 268 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 237 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi5g04974 Vivi-Chr5 150237752 150239885 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04974 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 34.177 4.64e-09 54.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04974 K12891 - twl:119983878 261.922