Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04951 ATGGATGCTTCATCTTTAACCAGTTCAAGTCTAAGCATTTCAAATTCAAAGCCATTTTTTCATTATCTTCCACAACAAAGACCATGTCACGTGCACTTTGCAGTTTCATGCAGAGTAAAGAGTATGGAGCAAACAAGGAATGGATCAAATTTCTACAAAATGTTATCCGTGAATCCGAAAAGTGCAACAATGGAAGAGATAAAGAGAGCTTATAGATCAATGGCACTTCAATATCATCCCGATGTGTGCCATGATCCTTCGATGAAAGAGGAATCAACTAGAATGTTTGTTCGGTTAAACGCGGCTTATGAAACTTTGTCAAATCCTATGCTTCGTGAACAATATGATAGTGAGTTGGGCTTGAGAAGTAGGATGATGAATAATGATGTTGTTGCTGAAGAGATTTGGAGAAGTAGGTGGCAAGAACAAGTGGTTGAGTTGAAGAAAAGGTCTAGTAGACGTATGGGACAAAATGGGAGGTCTTGGGGTAGCAGAATGAGGACACAAAACATGAAAGATAGGAACTAA 528 0.3883 MDASSLTSSSLSISNSKPFFHYLPQQRPCHVHFAVSCRVKSMEQTRNGSNFYKMLSVNPKSATMEEIKRAYRSMALQYHPDVCHDPSMKEESTRMFVRLNAAYETLSNPMLREQYDSELGLRSRMMNNDVVAEEIWRSRWQEQVVELKKRSSRRMGQNGRSWGSRMRTQNMKDRN 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04951 175 SUPERFAMILY Chaperone J-domain 38 115 IPR036869 -
Vivi5g04951 175 Pfam DnaJ domain 50 116 IPR001623 -
Vivi5g04951 175 ProSiteProfiles dnaJ domain profile. 50 119 IPR001623 -
Vivi5g04951 175 CDD DnaJ 50 108 IPR001623 -
Vivi5g04951 175 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 29 173 - -
Vivi5g04951 175 MobiDBLite consensus disorder prediction 148 175 - -
Vivi5g04951 175 PRINTS DnaJ domain signature 71 86 IPR001623 -
Vivi5g04951 175 PRINTS DnaJ domain signature 91 111 IPR001623 -
Vivi5g04951 175 PRINTS DnaJ domain signature 53 71 IPR001623 -
Vivi5g04951 175 ProSitePatterns Nt-dnaJ domain signature. 96 115 IPR018253 -
Vivi5g04951 175 Gene3D DnaJ domain 37 144 IPR036869 -
Vivi5g04951 175 SMART dnaj_3 49 111 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04951 Vivi-Chr5 150004776 150005634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04951 52 117 C2H2 Transcription Factor Family AT1G74250 41.176 1.35e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04951 - - gmx:100811478 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04951 5 150004776 150005634 Vivi5g04951 5 150004776 150005634 ECH
Vivi5g04951 5 150004776 150005634 Vivi5g04951 5 150004776 150005634 PCT