Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04944 ATGGAGAACGTGATGAGCAACGGCAAGATGAAGGTTTCGAAGCTGCGAACTTTGAACGAGAACTTTTCGCCGTTGCAGATCGAGTTGGATGAAACGAGAGGACGCTATCTCCAATCAGCGACGATGAGTCCGCGTTTTCAACACTACACCGAGAAACACGACGTCGGCTCGCCGCTCGTTCAATACTTCTACGCCGGATCTCCGATTTCATCTAAAGCCGGCGAGGCTTTCAATTCTCCGCTTTTCGGCTCCAGCAAGTATAAATCCGCCAACAGTAGCTTTGGTTCAGGGAACAGTAGCTTTGGCTCTCGCGGTAGATTGTCCCTCTCTCCGCTTTCTTCAATCGAGAACTTCGAATTGAAGTCGCCGCCGATGTACCGAACGCCAGTGAAGGTGGAAGAGGAAGTTATTGTGATGGATGATATTCAGGTGAGGCCAAACTTCGGAGGAAAGAGCGGAAGGTCATCATCGTCTTCTTCCAGTAGGGGCTCCTCTTCCTCTTCTTCGTCAAACAAGAGTTTGTTTAAGACGGAGATTTGCAGAGCATGGGAAGAAACTGGAAACTGCCGCTTCAATTCCAAATGCCAGTTTGCTCACATCAGAGAAGAGCTTCATCCAGGTCGTTTCCCCATGAATATTAAATCTGAGATGGGCAAAATTTCTATTAGACCAGGACCGTCCATATATAGCCCAAATACCTGCATTGTTCAAGAACATCAAGAAGTAGCTGAACCTCAACGTGTAGTCACAAGACCCATAATAATATCACAACCATCTTCACCTGAACGTCATCGCATGCACACCAAATCCCATACCATCAGTGACTGGTCACCTCTGGATGATGGCATTGAGTGTTTCCTCCCAAATTGTGCAGATAGAGTTCCCTCAAGGCAGGAAGTTGATGCACATATTATTTCTGTTCTTAATCAGTCGACTACTAAAAGAAGACTACCAGTATTCGCGGAACTTTGCTAG 975 0.4677 MENVMSNGKMKVSKLRTLNENFSPLQIELDETRGRYLQSATMSPRFQHYTEKHDVGSPLVQYFYAGSPISSKAGEAFNSPLFGSSKYKSANSSFGSGNSSFGSRGRLSLSPLSSIENFELKSPPMYRTPVKVEEEVIVMDDIQVRPNFGGKSGRSSSSSSSRGSSSSSSSNKSLFKTEICRAWEETGNCRFNSKCQFAHIREELHPGRFPMNIKSEMGKISIRPGPSIYSPNTCIVQEHQEVAEPQRVVTRPIIISQPSSPERHRMHTKSHTISDWSPLDDGIECFLPNCADRVPSRQEVDAHIISVLNQSTTKRRLPVFAELC 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04944 324 MobiDBLite consensus disorder prediction 149 171 - -
Vivi5g04944 324 MobiDBLite consensus disorder prediction 143 171 - -
Vivi5g04944 324 PANTHER CCCH ZINC FINGER/TIS11-RELATED 95 224 IPR045877 GO:0003729
Vivi5g04944 324 SUPERFAMILY CCCH zinc finger 173 205 IPR036855 GO:0046872
Vivi5g04944 324 Gene3D - 166 206 - -
Vivi5g04944 324 ProSiteProfiles Zinc finger C3H1-type profile. 174 202 IPR000571 GO:0046872
Vivi5g04944 324 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 175 199 IPR000571 GO:0046872
Vivi5g04944 324 SMART c3hfinal6 174 201 IPR000571 GO:0046872
Vivi5g04944 324 FunFam zinc finger CCCH domain-containing protein 15-like 168 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04944 Vivi-Chr5 149931600 149935151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04944 171 206 C3H Transcription Factor Family AT1G68200 50.000 8.99e-07 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi5g04944 zf-CCCH 4.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04944 - K18753 gmx:102665928 248.825