Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04936 ATGGGTGATAGTAACAACAATGTTAATCTTCCACCAGGGTTTCGATTTTATCCAACTGATGAAGAACTTGTGGTCCATTTCCTTCATAGAAAGGCCTCTCTTTTACCTTGTCATCCTGATGTTATCCCTGATCTTGACCTCTACCCCTTTGATCCATGGCAACTTCAAGGTAGAGCTTTGGAAGAGGGGAACCAATGGTATTATTATAGTAGAAGGACACAAAATAGAATTACTAACAATGGTTATTGGATGCCAATGGGAATGGAAGAACAAGTTGTAACAAGTTCAAGCAATAAGAGAGTTGGTATGAAGAAATATTATGTTTTTCATATTGGTGATGCACCTAATGGTAGCAAAACTAATTGGATAATGCAAGAGTATCGTCTTTCTGATTCCGCTTCTTCTTCTTCTTCAAGATCATCGTCCAAAAGAAAATCACACCCGAAATCGGAACATAGTAGGTGGGTGATATGTCGAGTTTATCAACGCGATGAGGATGACGATGAAGATGGAGATGGAACTGAATTATCTTGTTTGGATGAAGTTTTTTTATCATTGGATGATCTTGATGAAGTAAGCTTGCCAAATTAG 591 0.379 MGDSNNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLDLYPFDPWQLQGRALEEGNQWYYYSRRTQNRITNNGYWMPMGMEEQVVTSSSNKRVGMKKYYVFHIGDAPNGSKTNWIMQEYRLSDSASSSSSRSSSKRKSHPKSEHSRWVICRVYQRDEDDDEDGDGTELSCLDEVFLSLDDLDEVSLPN 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04936 196 Pfam No apical meristem (NAM) protein 11 129 IPR003441 GO:0003677|GO:0006355
Vivi5g04936 196 FunFam NAC domain-containing protein 104 19 166 - -
Vivi5g04936 196 MobiDBLite consensus disorder prediction 133 152 - -
Vivi5g04936 196 Gene3D NAC domain 19 167 IPR036093 GO:0003677|GO:0006355
Vivi5g04936 196 ProSiteProfiles NAC domain profile. 10 163 IPR003441 GO:0003677|GO:0006355
Vivi5g04936 196 SUPERFAMILY NAC domain 6 163 IPR036093 GO:0003677|GO:0006355
Vivi5g04936 196 PANTHER NAC TRANSCRIPTION FACTOR 56 10 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04936 Vivi-Chr5 149713411 149714626 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04936 9 163 NAC Transcription Factor Family AT1G69490 42.945 3.14e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi5g04936 NAM 4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04936 - - gmx:100788893 324.709