LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g04926	ATGGCAGATGAGGATGAGTATCGCTGTTTTGTTGGTGGCCTTGCATGGTCAACATCGGATAGAAAGTTAAAAGATACATTTGAAAAATTTGGCAAGCTTACGGAGGCGAAGGTGGTTGTTGACAAATTCTCTGGGCGTTCTCGTGGTTTTGGATTTGTTACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATTCTATGAATGGGATAGATTTAGATGGCCGAACTATTACGGTCGACAAAGCTCAACCTCATCAAGGATCAGGTAGAGATGCTAGAGATGATGGTGATCGCTACCGAGAACGTGGTCGTGATCGGGGTGATCGTGACCGTGACCGAGGTGGTCGAGGATCCAGTGATGGAGGATGCTTTAATTGTGGTAAGCCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGGGGAAGAGGAGGGAGGTATGGTGGTGGCAGAGAAAGTAGATACGGTGGAAGCGGTGGTGGTGGTGGTCACTATGGTCCAGATAGAAATGGAGATCGTTATTCTGGAGGTCGTAGCAGGGATTCGGGTAGTCGTGGAGATTCTGGAAATGATCGTTACTCCCGTGATCGTGATCGTGCTGGACCATATGAACGACGTGGATCTGGAGGCTTTCGTTGA	639	0.4773	MADEDEYRCFVGGLAWSTSDRKLKDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDSMNGIDLDGRTITVDKAQPHQGSGRDARDDGDRYRERGRDRGDRDRDRGGRGSSDGGCFNCGKPGHFARECPSEGGRGGRYGGGRESRYGGSGGGGGHYGPDRNGDRYSGGRSRDSGSRGDSGNDRYSRDRDRAGPYERRGSGGFR	212

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g04926	212	Gene3D	-	1	119	IPR012677	-
	Vivi5g04926	212	PANTHER	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	1	209	-	-
	Vivi5g04926	212	CDD	RRM2_NsCP33_like	8	83	-	-
	Vivi5g04926	212	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	85	IPR000504	GO:0003723
	Vivi5g04926	212	MobiDBLite	consensus disorder prediction	171	205	-	-
	Vivi5g04926	212	Gene3D	-	120	184	-	-
	Vivi5g04926	212	SUPERFAMILY	Retrovirus zinc finger-like domains	106	143	IPR036875	GO:0003676\|GO:0008270
	Vivi5g04926	212	SUPERFAMILY	RNA-binding domain, RBD	3	115	IPR035979	GO:0003676
	Vivi5g04926	212	ProSiteProfiles	Zinc finger CCHC-type profile.	124	139	IPR001878	GO:0003676\|GO:0008270
	Vivi5g04926	212	MobiDBLite	consensus disorder prediction	87	118	-	-
	Vivi5g04926	212	SMART	c2hcfinal6	123	139	IPR001878	GO:0003676\|GO:0008270
	Vivi5g04926	212	MobiDBLite	consensus disorder prediction	68	212	-	-
	Vivi5g04926	212	Pfam	Zinc knuckle	123	139	IPR001878	GO:0003676\|GO:0008270
	Vivi5g04926	212	SMART	rrm1_1	8	81	IPR000504	GO:0003723
	Vivi5g04926	212	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	10	79	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g04926	Vivi-Chr5	149494889	149496765	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi5g04926	9	84	Eukaryotic Initiation Factors Gene Family	AT4G34110	35.526	8.77e-08	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g04926	-		-	cill:122310752	227.639