Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04893 ATGAAGTGGATAATTTGTAAAAATTCATTGAAAGCACTAATACCAGTGGTGCTAATGGTGTTCTGTCAGATTGGATATGCTGCTGTGAATATAATGTACAAGCTGGCCATAAATGATGGGATGAGCATGAGGGTAGCCGCCGCCTACCGCCTCTGTTTTGCGGCGGCTTTCACTATTCCGCTTGCTATTATCTTTGATAGGAAGGAGAGACCAAAGATTACTTGGAAGGTTCTTTATATGGCATTTCTTTGTGGATTGTTTGGGGGAAGTTTACTTCTAAACCTTTATGGCCTGGGATTGACTTTGACTTCAGCAACGTTTATGTTGTCCATGCTCAACCTTGTTCCAGGAGTAACCTTCATCATGGCTATATCCTTCGGATTGGAAAAGCTAAATTGGAGATTAGCAGAGGGAAAGGCCAAGATAATAGGAACAATAATTAGCATTGGAGGGGCAATGCTAATGATATTTTACAAAGGAGTGGAAATTAATATTTGGAATTCCAATATAAACCTTATGCATGACCAAAATGGGATTGTGGAACCAATACCTGTCAACTTTAGTAGTAAACTCTTGGGTGTTCCATGTGGCATAGGAAGTTGTTGCTCTTTTTCTTTGTGGCTAATTATCCAGACTAAGTTGAATGAAGAATATCCAAGTCATCATTCTAGCACAGCTTTGATGTCTACTATGGGAGCAATACAATCAATTGTTCTTGCTCTATGTGTCGATAGAGAATGGAGCAAGTGGAAGCTTGGTTACGATATCAGACTTCTCACTATTGTTTATTCGGGAGTTATAGCTTCTGGATTATTGATTGTTGTTATTGCTTGGTGCATAAAGATAAGAGGTCCTTTATTTGCATCGGTTTTCAATCCTCTTCAGCTTTTACTTGTGGCTATATCTGCTTATTTATTGTTGGATGAGAAGTTATATTTAGGAAGTGTATTTGGAGCCGTGTTGATCGTATGTGGCATATATGCAGTGATTTGGAGCACGAGCAAAGAAATGGAAAATAAGAAGAAGTTATTATCATTAGAAACCAACATTAAGTCAGAAAAAGTATAA 1068 0.3811 MKWIICKNSLKALIPVVLMVFCQIGYAAVNIMYKLAINDGMSMRVAAAYRLCFAAAFTIPLAIIFDRKERPKITWKVLYMAFLCGLFGGSLLLNLYGLGLTLTSATFMLSMLNLVPGVTFIMAISFGLEKLNWRLAEGKAKIIGTIISIGGAMLMIFYKGVEINIWNSNINLMHDQNGIVEPIPVNFSSKLLGVPCGIGSCCSFSLWLIIQTKLNEEYPSHHSSTALMSTMGAIQSIVLALCVDREWSKWKLGYDIRLLTIVYSGVIASGLLIVVIAWCIKIRGPLFASVFNPLQLLLVAISAYLLLDEKLYLGSVFGAVLIVCGIYAVIWSTSKEMENKKKLLSLETNIKSEKV 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04893 355 Pfam EamA-like transporter family 15 156 IPR000620 GO:0016020
Vivi5g04893 355 Pfam EamA-like transporter family 192 330 IPR000620 GO:0016020
Vivi5g04893 355 PANTHER WAT1-RELATED PROTEIN 15 338 IPR030184 GO:0016020|GO:0022857
Vivi5g04893 355 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 334 - -
Vivi5g04893 355 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04893 Vivi-Chr5 148459991 148471113 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04893 16 354 Nodulin-like Gene Family AT1G25270 39.233 1.10e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04893 - - mtr:25493310 516.153