Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04880 ATGTCTCACAGAAAGTTTGAGCACCCAAGACACGGTTCTCTCGGCTTTCTCCCTAGGAAGCGTGCTGCTCGCCATCGCGGAAAAGTGAAAGCCTTTCCAAAGGACGATCCTACCAAACCATGCAGCTTGACTGCTTTTGTTGGCTACAAGTCTGGGATGACCCATATTGTTAGGGAGGTTGAGAAACCTGGATCCAAGCTTCATAAGAAAGAGACATGTGAAGCTGTCACTATCATTGAAACTCCTCCACTTGTTGTTGTTGGAGTCGTGGGATATGTGAAAACACCACGCGGCCTTCGCACACTGAATACTGTTTGGGCTCAGCATCTCAGTGAAGATATCAAGCGTCGGTTTTATAAGAACTGGTGCAAGTCAAAGAAGAAGGCTTTTACCAAATATTCCAAAAAGTATGAAACAGAAGAAGGGAAGAAAGATATTCAAACTCAGCTTGAGAAATTGAAAAAATATGCTACTGTCATCCGTGTTCTTGCTCATACTCAACTCAGGAAGTTGAAGGGTCTAAAACAAAAGAAAGCTCATTTGATAGAGATTCAAGTTAATGGTGGAACAATAAGCCAGAAGGTGGACTATTCATACAGTTTCTTTGAAAAGCAAGTCCCTGTTGATGCTGTTTTTCAAAAGGATGAGATGATTGATATCATTGGAGTAACAAAGGGTAAAGGTTATGAAGGTGTGGTAACTCGTTGGGGTGTCACCCGCCTTCCACGGAAGACTCACAGAGGTCTTAGGAAGGTTGCTTGTATTGGTGCTTGGCACCCCGCTCGTGTTTCTTTCACAGTTGCCAGGGCCGGTCAGAATGGATACCATCATCGTACTGAATTGAACAAGAAGATCTACAAGGTTGGCAAGACTGACCAAGAGTCACACACAGCCATCACAGAATTCGACAGGACTGAGAAGGATATTACTCCTATGGGTGGATTTCCTCATTATGGTATAGTGAAGCATGACTATCTTATGGTGAAGGGAGGCTGTGTTGGTCCAAAGAAGCGGGTTTTCACTCTTCGTCAGTCACTTCTCAAGCAGACATCTCGATTGGCTCTTGAAGAGATCAAATTGAAGTTCATTGACACCTCCTCCAAGTTTGGTCATGGTCGCTTCCAGACTACTCAGGAGAAACAGAAGTTTTATGGTCGTTTGAAAGCTTAG 1170 0.4393 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPCSLTAFVGYKSGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRTLNTVWAQHLSEDIKRRFYKNWCKSKKKAFTKYSKKYETEEGKKDIQTQLEKLKKYATVIRVLAHTQLRKLKGLKQKKAHLIEIQVNGGTISQKVDYSYSFFEKQVPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVGKTDQESHTAITEFDRTEKDITPMGGFPHYGIVKHDYLMVKGGCVGPKKRVFTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04880 389 MobiDBLite consensus disorder prediction 1 20 - -
Vivi5g04880 389 FunFam Ribosomal protein L3 265 389 - -
Vivi5g04880 389 FunFam 60S ribosomal protein L3 1 77 - -
Vivi5g04880 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Vivi5g04880 389 FunFam 60S ribosomal protein L3 44 149 - -
Vivi5g04880 389 FunFam 60S ribosomal protein L3 83 207 - -
Vivi5g04880 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 384 IPR045077 GO:0003735|GO:0005840|GO:0006412
Vivi5g04880 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Vivi5g04880 389 Gene3D - 83 207 - -
Vivi5g04880 389 Gene3D Translation factors 44 385 - -
Vivi5g04880 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Vivi5g04880 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vivi5g04880 389 FunFam 60S ribosomal protein L3 226 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04880 Vivi-Chr5 148305523 148310139 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04880 1 386 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 86.528 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04880 K02925 - gmx:100792174 725.317