Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04874 ATGGAAACTAATCTTTCATTGAAGATAGATAATGATGATTTCCATCAAGAAGTTGAAAATCATGAACATGTTGAGAAAGAAGAAGTTCATGAAACTACAACTGGTGAAATAGAAGATGATGATGCTTCACTTTCTTTGCAAGATAACACAAAAATAAAAGAGTTAAGTGCTTTAGAAATGGAGATGGAAAATATGAAAGAAGAAAACAAAGCATTGAGGAAAGTGGTGGAACAAACAATGAAAGATTACTATGATCTGCAAACAAAATTTTCAGTCATCCAAGAAAAAAATAATAATAAAAGAAAGGATCATCATCAACTTTCTCTCTCATTACAAGACAATAACGCAACCACAAGTGGTGAAGGGCCATCAAGATTGATTCATGAGATGTTTAGCAAAAGCATTCAAAGAGCTTCATCTCCAATAATAGTGAGCAATAGTGATAATAGTATAAGTGAGAGTGATTTGGGTTTATCACTAAGGTTGCAAACAAGGACTTGTGAGAAAGATATTGAAGAAAATAAAGAAGGGAAAAAAGAAGAATTGACAGGTTTTGAAGCAGTGCAGAATAAATTTCAGAGAATGCATGAGTTGCCTGGTATTACTACTACTCATCCTGCTTATTCACCTCCTAATAGAAAGGCTAGGGTTTCTGTTAGAGCAAGATGTGAAACTGCCACAATGAATGATGGATGCCAATGGAGAAAATACGGACAAAAAATTGCTAAGGGAAATCCATGTCCACGAGCCTATTATCGTTGTACTGTAGTTCCAGGTTGCCCGGTTAGAAAACAGGTGCAAAGATGTATAGATGACATGTCTATACTAATTACAACATATGAAGGAACACATAACCATCCACTACCTGTTGGTGCAACTGCTATGGCTTCAACAGCTTCAGCAGCAGCTTCATTTATGTTACTAGATTCAAGCAATCTCAATTCAGATTATGGTTACACATCTCAACAAACCTATAATCCTTACATTAACAATACCTTCCACCACCCATTAAACCCGTCTTCAAATATTAGAAGCATAAACCCCAATGATCCATCTCAAGGGATTGTTCTTGATCTCACCAACAACAACAATCTCAACGAACCAGCGCGGCGTTTTTCTATGGCAGGTAGCTCAAGCTCCAGCTCCATCGCAACCGATCAACCTCGTTTTCCTTGGTTACAAAACAAATTTCAACAGAATAGTAGTTCTAGTAGTGCTAATATTGGAATGAACACTTTTCAAAACCCTAGAGTGCCATTGGATATTCATGATAGAATTTGGAAAGGATCAGAAGAAAGTAGTAATACTAATAACAATGTGTCTGCAATTGCATCAGATCCTAAGTTTAGGCTTGCTGTTGCAGCTGCAATTTCATCACTCATGAATAAAGAAAGCAACAACACTACTACTCACCATGGTAGCAACAATTAG 1431 0.3648 METNLSLKIDNDDFHQEVENHEHVEKEEVHETTTGEIEDDDASLSLQDNTKIKELSALEMEMENMKEENKALRKVVEQTMKDYYDLQTKFSVIQEKNNNKRKDHHQLSLSLQDNNATTSGEGPSRLIHEMFSKSIQRASSPIIVSNSDNSISESDLGLSLRLQTRTCEKDIEENKEGKKEELTGFEAVQNKFQRMHELPGITTTHPAYSPPNRKARVSVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVVPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNLNSDYGYTSQQTYNPYINNTFHHPLNPSSNIRSINPNDPSQGIVLDLTNNNNLNEPARRFSMAGSSSSSSIATDQPRFPWLQNKFQQNSSSSSANIGMNTFQNPRVPLDIHDRIWKGSEESSNTNNNVSAIASDPKFRLAVAAAISSLMNKESNNTTTHHGSNN 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04874 476 SMART WRKY_cls 228 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g04874 476 SUPERFAMILY WRKY DNA-binding domain 221 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi5g04874 476 MobiDBLite consensus disorder prediction 98 121 - -
Vivi5g04874 476 Coils Coil 48 82 - -
Vivi5g04874 476 ProSiteProfiles WRKY domain profile. 223 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g04874 476 Pfam WRKY DNA -binding domain 229 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g04874 476 FunFam probable WRKY transcription factor 31 213 290 - -
Vivi5g04874 476 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 30 466 IPR044810 GO:0003700
Vivi5g04874 476 Gene3D WRKY domain 213 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04874 Vivi-Chr5 148229575 148231849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04874 19 354 WRKY Transcription Factor Family AT1G68150 47.293 7.92e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi5g04874 WRKY 3.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04874 - - gmx:100820209 520.005