Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04857 ATGGCCACCACAATTTCACCAACAACATGCTTCATCTTTCTTCCTATAATAATTCTATCGTCATTTTGTCCCATAACAACACTATGTGCCACAGTTCTAGAAGACCTCAAAAACCTACACAAACCACAAGATTTCAACACAACAATCATCAACAACTGCATCAGAAACCCATCTCTCAGATACTGCAACTCCTCTCCCATGATGGACCTTGATGAAATATTCAGACACACTATTGTTGCTAGCCACCTTTGCAATGAATCTAACAACCCCAATTGTGTTGAATCATTCCCTAAAATCGATCTTCGAAACCGACCAAACATTGCTCCTCTTTACTTGTCTTTCACTTTCTTTTGGAAATATTGTCCCTTGACTATTCTATCCATTGATTTCTCAAATAATTCTATAAAGGGTAGTTTTCCAAATGATGTTTTTTTCTGCACACAGATTCAGTCTCTTGATTTGAGTATCAATGAATTCTCTGGTGAAATTCCAATTCAAAGTTTCTCTACATTAACCAACCTCACTTTTCTTAACCTCTCTTATAACAGTTTCTCAGAGAGTGAAATTTCTGATTCACAGTTTTTCAAAAAGTTTAACTCTTCTAGTTTTCTTCATTCTGGTGCTCTCATTGATCACAAAAAGTTTACTATAAAAGCTATCATTCTATTGGTTGGTTTTCCTATTCTTGTCATTTTGATGGTGATTTTCTTAGGATGGCTTTGTTTTCAAAGACCTGATTATCTTCCAAGAATACTTCAAAGAAGTGGGAGATATACATTCACACCAGCAATCCTAAAGTCGGCGACTTTCGGTTTTTCCAACAAGAATTTGATTGGTAAAAGTGAATTTGTTCACATATATAAAGGAGTGTTAAGAGATGGAACTAAAGTGAAAATTGAGATGTATTGGGATGATATATCAAGGGATGGTTATCATGAATTTGTTGAGGAGTGTAAGATTTTGTCTGAGTTAAACCACAAGAACCTTGTTAAGGTACTAGGGTGGTGTAAAGGTAGAAAATTCAGGGCTGTTATAACAGAATGGATAAGAGAAGAAAGTGTGGAAATGTGGCTGTTAGAATCAGGTCCTTCATGGAATCATAGAGTGAAAGTTTTGATGGGAGTTGTTGAATGCATGTTGTATCTGCATGAGGAATGGCCTGAAGTTGATTATGATCTCAAGATAAGTAGTGTTTTGGTACATGATAATGTTGAACCATTGATTTCAAGGTTTCAAGTTGGAGATAGAAACAATAGTAGAAAAAAAATATGCAAGTTTGGAGTATTTCTGTTAGAGATGATACTAAACAAGAGGGTTCAAGAGGACTTTGATGGAAATGATGCTGGATTTATTAGCTACATGAAAACCCTTCATCCTCCAGACATGCAGCAGATGATTGATGAGAGAATGGATGTTACTGAAACAGCTTTGCATCATGTTAAACAGGTTCTATCCCTGGGATTAATGTGTATAGACCAATCAAACAATGAGAAATTACCAAGCTTGGCACATTTATATAGTATTGTATCAAAGGCCTATAAGGATAGCCTTGTTTTACCATCTGCAAATCATAAAACAACTCATGGAGATAGAGTTAAGGGACACAAGCGCGTTCAGTTCAAATAA 1626 0.3567 MATTISPTTCFIFLPIIILSSFCPITTLCATVLEDLKNLHKPQDFNTTIINNCIRNPSLRYCNSSPMMDLDEIFRHTIVASHLCNESNNPNCVESFPKIDLRNRPNIAPLYLSFTFFWKYCPLTILSIDFSNNSIKGSFPNDVFFCTQIQSLDLSINEFSGEIPIQSFSTLTNLTFLNLSYNSFSESEISDSQFFKKFNSSSFLHSGALIDHKKFTIKAIILLVGFPILVILMVIFLGWLCFQRPDYLPRILQRSGRYTFTPAILKSATFGFSNKNLIGKSEFVHIYKGVLRDGTKVKIEMYWDDISRDGYHEFVEECKILSELNHKNLVKVLGWCKGRKFRAVITEWIREESVEMWLLESGPSWNHRVKVLMGVVECMLYLHEEWPEVDYDLKISSVLVHDNVEPLISRFQVGDRNNSRKKICKFGVFLLEMILNKRVQEDFDGNDAGFISYMKTLHPPDMQQMIDERMDVTETALHHVKQVLSLGLMCIDQSNNEKLPSLAHLYSIVSKAYKDSLVLPSANHKTTHGDRVKGHKRVQFK 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04857 541 SUPERFAMILY L domain-like 73 198 - -
Vivi5g04857 541 Pfam Protein tyrosine and serine/threonine kinase 275 428 IPR001245 GO:0004672|GO:0006468
Vivi5g04857 541 ProSiteProfiles Protein kinase domain profile. 272 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04857 541 SUPERFAMILY Protein kinase-like (PK-like) 254 492 IPR011009 -
Vivi5g04857 541 Gene3D Ribonuclease Inhibitor 50 214 IPR032675 -
Vivi5g04857 541 Gene3D Phosphorylase Kinase; domain 1 254 348 - -
Vivi5g04857 541 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 124 198 - -
Vivi5g04857 541 Gene3D Transferase(Phosphotransferase) domain 1 352 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04857 Vivi-Chr5 148009099 148011560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04857 128 441 Receptor kinase-like Gene Family AT2G23950 25.815 3.82e-27 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi5g04857 PK_Tyr_Ser-Thr 9.5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04857 - - gmx:100779045 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04857 5 148009099 148011560 Vivi5g04857 5 148009099 148011560 ECH