Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04854 ATGGTGACATTCTCGGTCGGTGGATGCGACGACGGTGAAGGACCTAGCAACCCCAACCAGAAGCGCCGAAGGGTAGACGACGGAGAAGAAACATCATCTACAAGAGAAGAAGAAAATCCACAACCACAAGCAGGGTTCGAAATGGAAAATCCCCCAATTGGAACCCTAGAAAACGAAGGAACATCTGGATCCAACGTAGAACAAAATAGCGATTTGGGTAAGAACGTATGTGCCATCATTTCTGACCCTGATGTTCTTGATTGCTTCATTTGCTCTGAGCCTTTGACGATTCCTATATTCCAGTGTGAGAATGGGCATATTGCTTGCTCTAAATGTTGTGGGGAACTTAGGAACAAATGTCCCTTGTGCTTAATGCCTATTGGGTACAATCGTTGCCGTGCTGTGGAGAAGTTGTTGGAATCGATTAAAATATCATGCCCGAATGCAAAATACGGCTGCAAAGAAATGTTTAGTTGCAATTTGAAAAGTAGCCACGAGAAGGACTGTGTATATATACCATGTAAGTGTCCACATACAGGTTGCAACTTTCTTGCATCATCCAAAGAGTTAGCTCTCCACTTCAGCCATAGACATGTAGGCTTTGGAATACAGTTTACATATGACAAATTTATATCCGTCTCGTTAAATACTCGCCAGAAAGAAATTGTTCTTGTAGATCAAAATGATGCAAGACTGTTTATTGTTCACAATTACCTCGTGGATCTGGGAAATATAGTCCAGGTTAGTTGCCTTGGCCCCAATTTGAAAATGGATATTCATTATGATGTCTTGGCTAGGTCTCAGGGGAGCACATTAATATTGCAATCTACTACGAAGACCATTCAAGAGAACAATGGTTGTGCTCCTACAACTAACTTTCTGTTGATACCTTCGGATCATTTTGGTTTTGGACAACTCAAATTGGATATTCGTATAAAGCCTCCTAAAACCATAGCTGAAGATTGA 966 0.4141 MVTFSVGGCDDGEGPSNPNQKRRRVDDGEETSSTREEENPQPQAGFEMENPPIGTLENEGTSGSNVEQNSDLGKNVCAIISDPDVLDCFICSEPLTIPIFQCENGHIACSKCCGELRNKCPLCLMPIGYNRCRAVEKLLESIKISCPNAKYGCKEMFSCNLKSSHEKDCVYIPCKCPHTGCNFLASSKELALHFSHRHVGFGIQFTYDKFISVSLNTRQKEIVLVDQNDARLFIVHNYLVDLGNIVQVSCLGPNLKMDIHYDVLARSQGSTLILQSTTKTIQENNGCAPTTNFLLIPSDHFGFGQLKLDIRIKPPKTIAED 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04854 321 Coils Coil 319 321 - -
Vivi5g04854 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 31 313 IPR044286 -
Vivi5g04854 321 ProSiteProfiles Zinc finger SIAH-type profile. 141 199 IPR013010 GO:0008270
Vivi5g04854 321 MobiDBLite consensus disorder prediction 16 36 - -
Vivi5g04854 321 SUPERFAMILY TRAF domain-like 141 312 - -
Vivi5g04854 321 CDD RING-HC_SIAHs 86 123 - -
Vivi5g04854 321 Pfam Seven in absentia protein family 131 203 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vivi5g04854 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 194 IPR013083 -
Vivi5g04854 321 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04854 Vivi-Chr5 147971721 147974169 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04854 84 180 C3H Transcription Factor Family AT2G41980 37.113 3.67e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04854 K04506 - gmx:100778869 385.185