Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04846 ATGGAGTGGATGATGCGAAAGACCAAGACCAAGACGAAGAAAAAGCCGCCTCGATTGGAGCGACTCAACGCCAAAAAGAACATCAATTACCAACTCCCCACCACCACCGCCGCCGCCATCCCATCTCCTTCTCCATCTCCATCTCCCTCCGATGAAGAAACCAGTCTCCGTGTATTAGGAATCGACGGCGAATTCGACCGTATCTTTCAGAGTTTGGGCCTTTCCGGTCCTGAGGATTTCTCTATCCCAACACAAGATTGGGAAGCTCGAAAGGTTCGCTCTTCCAACGTTGGTTCAATTTCAGTTTCTGAGGATTCTGCTGTTGTGATTGTTAGGGATTCGCCTTCTTCTTCGGGGGAACATAATGTTAGGGGTGTTGTTGATCCGCTCAGAAACGGTGAAAGGAGTGTGCTTTTTACGGATTCGGGTTCTTTCACTACTTCACATGATTATGATAGTGATGGTGGTGGGGAGAGAACGGTGTTTCCTTATGGGTGGCTTAAACCCACTTTTTCTTCGTGGCAAAAGGGTACCATTCTCGGAAAGGGTTCTTTTGGAACGGTTTATGAATGCCTCACCGACGATGGAAACTTTTATGCGGTGAAAGAGGTGTCTTTGTTGGATGATGGTCACCAGGGAAGACAAAGCATTTTCCAACTTCAGCAGGAAATATCTCTTTTGAGTAGGTTTCAACATGAAAACATAGTTCGATATTATGGCTCTGACAAGAATGAAAGCACACTGTATATATTCCTTGAGCTTGTGTCAAAAGGGTCATTGGCCAGTCTTTATCAAAGCTATCACCTAAATGATTCTCAAGTTTCTGCATACACAAGACAGATTTTATATGGCTTGAAGTATCTTCATGAAAATGATGTGGTCCACAGGGATATCAAGTGTTCTAATATACTGGTTGATGTAAATGGTTCGGTCAAGCTTGCAGATTTTGGGTTGGCAAAGGCAACAAAATTAAATGATGTTAAATCAAGCAAAGGCTCCCCATACTGGATGGCTCCCGAGGTTGTTAACTTAAGAAACCAAGGTTACGGGCTAGCGGCTGATATATGGAGCTTAGGATGCACGGTTTTAGAGATGTTGACGAGGCAGCCACCTTACTCTGAATTAGAAGGAATGCAAGCAATATTTCGGATTGGTCGGGGTGAACTTCCACCGATTCCTGAATCTCTATCTAATGATGCCCGAGATTTCATTCTTAAATGCTTACAAGTTAACCCAAGTAAACGGCCAACTGCAGCTCAGCTATCAAATCATCCATTTCTAAGGAGACGATTAAGCGCAGGTTCTCCACGTATTAATAGTATTGTTCAGCCTTAA 1335 0.439 MEWMMRKTKTKTKKKPPRLERLNAKKNINYQLPTTTAAAIPSPSPSPSPSDEETSLRVLGIDGEFDRIFQSLGLSGPEDFSIPTQDWEARKVRSSNVGSISVSEDSAVVIVRDSPSSSGEHNVRGVVDPLRNGERSVLFTDSGSFTTSHDYDSDGGGERTVFPYGWLKPTFSSWQKGTILGKGSFGTVYECLTDDGNFYAVKEVSLLDDGHQGRQSIFQLQQEISLLSRFQHENIVRYYGSDKNESTLYIFLELVSKGSLASLYQSYHLNDSQVSAYTRQILYGLKYLHENDVVHRDIKCSNILVDVNGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNQGYGLAADIWSLGCTVLEMLTRQPPYSELEGMQAIFRIGRGELPPIPESLSNDARDFILKCLQVNPSKRPTAAQLSNHPFLRRRLSAGSPRINSIVQP 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04846 444 SMART serkin_6 174 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04846 444 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 90 435 - -
Vivi5g04846 444 FunFam Mitogen-activated protein kinase 1, putative, expressed 172 439 - -
Vivi5g04846 444 Gene3D Transferase(Phosphotransferase) domain 1 172 440 - -
Vivi5g04846 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
Vivi5g04846 444 Pfam Protein kinase domain 175 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04846 444 MobiDBLite consensus disorder prediction 1 54 - -
Vivi5g04846 444 ProSiteProfiles Protein kinase domain profile. 174 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04846 444 SUPERFAMILY Protein kinase-like (PK-like) 158 433 IPR011009 -
Vivi5g04846 444 ProSitePatterns Protein kinases ATP-binding region signature. 180 202 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04846 Vivi-Chr5 147815071 147820371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04846 18 96 MAP Kinase Kinase Kinase AT4G08500 41.111 5.42e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vivi5g04846 Pkinase 1e-71 CL0016