Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04822 ATGAATATCCTTAATGCTCATGCTAACTTGCATAAGAGAAAGCCTTCCTTCATTCCTGATGGGAATCATGCTGCTTTCAAGACATCAAGGAAGGAAACCTATGTGGACTCTCTTGAAAGAAAGGAAGATGCTGTCAGTGATAACAACAACAATGAAGAAAAAGATGAAAAGAATAAGCCTTCTACTCGATGTTTCAGCCATGGATATCATTTAATGGAAGGAGAAATGAACCATGGAATGGAAGACTATGTTTTCGCTCAACACAGGAAACTCAATGGTTACGATTTAGGATTGTACGCAATATTCGATGGACATGCAGGCCGTGATGTTGCAAAATATTTGCAAAACCATCTATTTGAAAATATACTCAATGAGCCTGATTTCTGGGAAAATCCAGTGCATGCTGTTAAGAAAGCATGTAAAGCAACCGATGAGGAGATATTAGAAAACATAGCTGATTGGCGTGGAGGATCAACCGCTGTAGCAGCAATACTAATTAATGGAGTAAAGCTAATTGTAATCAATGTTGGTGATTCTCGCGCTATATCGTGCAAAAACGGTGTTGCGAAACAGCTTACGGTGGATCATGAACCGGAGAAGGAAAAGGAAAAAGATATGGTTGAGAGAAGAGGAGGTTTTGTGTCTAAGAGACCTGGGAATGTTGCAAGAGTGGATGGAGAGTTAGCAATGACAAGAGCGTTTGGTGATGGAAAGCTGAAAGAGCATATCACTGCAGAGCCAGATGTGATGGTTAAGAAGATTGATGATGAGACTGAATTCATTATTTTGGCAAGTGATGGTCTGTGGAAGGTGATGACAAATCAAGAGGTTTGTGATTGTATTAGGGATGTTGATGATGCTCAAAAAGCAGCAAAAAAGTTGGTGAAAGAAGCCAAATCCATGGGAAGCTACGATGATATTTCATGCATAGTTGTTATGTTTTAG 945 0.3958 MNILNAHANLHKRKPSFIPDGNHAAFKTSRKETYVDSLERKEDAVSDNNNNEEKDEKNKPSTRCFSHGYHLMEGEMNHGMEDYVFAQHRKLNGYDLGLYAIFDGHAGRDVAKYLQNHLFENILNEPDFWENPVHAVKKACKATDEEILENIADWRGGSTAVAAILINGVKLIVINVGDSRAISCKNGVAKQLTVDHEPEKEKEKDMVERRGGFVSKRPGNVARVDGELAMTRAFGDGKLKEHITAEPDVMVKKIDDETEFIILASDGLWKVMTNQEVCDCIRDVDDAQKAAKKLVKEAKSMGSYDDISCIVVMF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04822 314 SMART PP2C_4 56 312 IPR001932 -
Vivi5g04822 314 Pfam Protein phosphatase 2C 79 307 IPR001932 -
Vivi5g04822 314 FunFam Probable protein phosphatase 2C 39 58 314 - -
Vivi5g04822 314 Coils Coil 35 55 - -
Vivi5g04822 314 ProSiteProfiles PPM-type phosphatase domain profile. 66 314 IPR001932 -
Vivi5g04822 314 CDD PP2Cc 65 312 IPR001932 -
Vivi5g04822 314 ProSitePatterns PPM-type phosphatase domain signature. 98 106 IPR000222 GO:0043169
Vivi5g04822 314 PANTHER PROTEIN PHOSPHATASE 52 312 IPR015655 GO:0004722|GO:0006470
Vivi5g04822 314 SUPERFAMILY PP2C-like 62 314 IPR036457 -
Vivi5g04822 314 Gene3D - 61 314 IPR036457 -
Vivi5g04822 314 MobiDBLite consensus disorder prediction 29 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04822 Vivi-Chr5 147483882 147485324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04822 65 314 PP2C-type Phosphatase Gene Family AT4G28400 57.371 4.60e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04822 - - gmx:100814772 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04822 5 147483882 147485324 Vivi5g04822 5 147483882 147485324 ECH