LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g04810	ATGGTTCTTCCTGTTACCCCTTCTGAGTTCAAAGATCGTTTCATCTTTGGATCTTCATATGCTTCACCAAAAGATCCTTCACCTCTATTGGATGCCTCAACACTTTCACGCAATTCTCCAAGATCTTCTTCGACTTGTTCCTCCTCTTCACACGAGTTTGCATCAGCAACATCCACACTTTGTGATTCATCACAACACTCTCAACAACAACAACAATCTTCTTGGCTCATTGACCCTAATTATCCATGGCGAAAAACCTATTTTTATCGCTCCAAATCTGCACCTGCTATGGCGGTTATCAGTGATTTCAGTCAAACACCTATGGCGGTTATCAGTGATTTCAGTCAAACAACTGTGAAAAGAACTCAATTCGGTAGCCAATTTATTATTCTCGAAGCTTTTATTTTTCTTGTTCTTTATTTGGCTTTAGGGGTTGTTATCTATTGGCTCAATCGTCATAGTTTTACAGCAACTGAGACTCATCCTATTGTAGATGCATTGTATTTTTGTATAGTCTCAATGTGCACAATTGGATACGGTGATATTACTCCTAATAGTACTGCAACCAAGATTTTCTCTATATTGTATGTGTTGATTGGTTATGGTTTGGTTGACATATTACTCAGTGGAATGGTTAGTTATGTTCTTGAGTTGCTAGAAAATCATTTGTTCAGGGCTGTGAAGAAAGGTAGGATGAGGATTTGGATGAATGTGGCATTGGCATTTGGGGTTGTGGTACTTTGTATTGGAGTTGGTGTCGGGGTTATGCATTTTGTGGAAAGGCTAGGGTGGGTAGATTCCTTTTATCTTTCGGTTATGTCTGTAACAACTGTAGGTTATGGTGATCATGCTTTCAAGACTATGCACTGTCGTATCTTCGCTGCAATTTGGTTGCTCGTGTCTACGTATGCGGTGGCCCGGGCGTTCCTTTATTTGGCGGAGGCAAAGAGGATTCTTGATCAGGACATGACTGTTGCTGCGTTTCTTGCTGCTGGCATAGACAACAATGGATTTGTGAGTAAATCAGAATATGTTATATACAAGCTGAAGGAGATGGGAAAAGTGACAGAGAAGGACATCATGCAGATCAATCAGAAATTTGATAGACTAGACACCGGCAACATTGGAAAAATAACACTTGGTGATCTCATGGAGGGTCATAATGGATGA	1170	0.4034	MVLPVTPSEFKDRFIFGSSYASPKDPSPLLDASTLSRNSPRSSSTCSSSSHEFASATSTLCDSSQHSQQQQQSSWLIDPNYPWRKTYFYRSKSAPAMAVISDFSQTPMAVISDFSQTTVKRTQFGSQFIILEAFIFLVLYLALGVVIYWLNRHSFTATETHPIVDALYFCIVSMCTIGYGDITPNSTATKIFSILYVLIGYGLVDILLSGMVSYVLELLENHLFRAVKKGRMRIWMNVALAFGVVVLCIGVGVGVMHFVERLGWVDSFYLSVMSVTTVGYGDHAFKTMHCRIFAAIWLLVSTYAVARAFLYLAEAKRILDQDMTVAAFLAAGIDNNGFVSKSEYVIYKLKEMGKVTEKDIMQINQKFDRLDTGNIGKITLGDLMEGHNG	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g04810	389	PRINTS	Two pore domain K+ channel signature	276	285	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Vivi5g04810	389	PRINTS	Two pore domain K+ channel signature	172	200	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Vivi5g04810	389	SUPERFAMILY	EF-hand	319	385	IPR011992	-
	Vivi5g04810	389	MobiDBLite	consensus disorder prediction	29	50	-	-
	Vivi5g04810	389	Gene3D	-	127	218	-	-
	Vivi5g04810	389	Gene3D	-	219	326	-	-
	Vivi5g04810	389	MobiDBLite	consensus disorder prediction	20	50	-	-
	Vivi5g04810	389	FunFam	Two-pore potassium channel 2-like	217	340	-	-
	Vivi5g04810	389	SUPERFAMILY	Voltage-gated potassium channels	127	220	-	-
	Vivi5g04810	389	SUPERFAMILY	Voltage-gated potassium channels	229	312	-	-
	Vivi5g04810	389	Pfam	Ion channel	135	215	IPR013099	-
	Vivi5g04810	389	Pfam	Ion channel	243	312	IPR013099	-
	Vivi5g04810	389	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	163	362	IPR003280	GO:0005267\|GO:0016020\|GO:0071805

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g04810	Vivi-Chr5	147333757	147336559	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi5g04810	3	389	Ion Channels	AT4G18160	52.871	1.34e-142	410

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g04810	K05389		-	gmx:100787238	508.834