Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04794 ATGGCCGCATCATCATCATCCATGGCTCTCTCTTCCCCAACCTTGGCTGGCAAGCAAGTCAAGCTGACCCCATCAAGCCAAGAATTGGGAGCTGCAAGGTTCACCATGAGGAAGTCTGCTAACACCAAGAAAGTAACCTCCTCTGGCAGCCCATGGTACGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCGTCCTACTTGACTGGAGAGTTCCCAGGTGATTACGGTTGGGACACTGCCGGACTCTCTGCTGACCCAGAGACATTCTCCAAGAACCGTGAGCTTGAAGTCATCCACTCCAGATGGGCTATGTTGGGTGCCTTGGGATGTGTTTTCCCAGAGCTTTTGTCTCGCAACGGTGTTAAATTCGGTGAAGCTGTGTGGTTCAAGGCAGGATCTCAAATCTTTAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCACGCTCAAAGCATCCTTGCCATCTGGGCCACTCAAGTTATCTTGATGGGAGCTGTTGAAGGTTACCGTATTGCCGGTGGTCCTCTTGGTGAGGTTGTTGACCCACTTTACCCAGGTGGCAGCTTTGATCCATTGGGGTTAGCTGACGACCCAGAAGCTTTTGCAGAATTGAAGGTGAAGGAACTGAAGAACGGTAGATTAGCTATGTTCTCAATGTTTGGATTCTTTGTTCAAGCTATTGTGACTGGAAAGGGTCCTTTGGAGAACCTTGCTGATCATCTTGCTGACCCAGTCAACAACAATGCATGGTCATATGCCACCAACTTTGTTCCCGGAAAGTGA 807 0.5019 MAASSSSMALSSPTLAGKQVKLTPSSQELGAARFTMRKSANTKKVTSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04794 268 Gene3D Chlorophyll a/b binding protein domain 59 261 - -
Vivi5g04794 268 FunFam Chlorophyll a-b binding protein, chloroplastic 59 261 - -
Vivi5g04794 268 SUPERFAMILY Chlorophyll a-b binding protein 51 265 - -
Vivi5g04794 268 Pfam Chlorophyll A-B binding protein 69 234 IPR022796 -
Vivi5g04794 268 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 268 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04794 Vivi-Chr5 147049664 147050638 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04794 4 268 Chloroplast and Mitochondria Gene Families AT1G29930 86.517 3.61e-169 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04794 K08912 - jre:108990271 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04794 5 147049664 147050638 Vivi5g04794 5 147049664 147050638 ECH