Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04792 ATGTTTTCGTCTCTAAACCTTAACTTGACTATAGTCATACTCATTTCAATTGCATCCACTATTGTTTCACATGCTCAAACATCACCAAAAGCAACCATTCAAATTGAAATTGAAGCATTGAAAGCTTTCAAAAAATCCATAACACATGACCCAACTAAATTTCTTGCTAATTGGATTGACACACACCCTCGTTGCAATTGGTCAGGCATTGAATGTACCAACAATTCAAACCATGTTATATCAATTTCTCTACCTCAACTTCAACTCCAAGGTCAGATTTCACCTTTCCTTGGAAACATTTCAACTCTTCAACTTCTTGATTTATCTTCAAACTCATTCACTGGTCAAATTCCAATTCAAATTACTCTATGTACTCAACTTACATCACTTTACCTGGTTGATAATTCTCTTTCGGGTTCGATTCCTTGCGAATTAAGTAACCTAAAAAGGCTGCAGTATTTGGATTTAGGTAACAACTTTTTCAATGGAACCCTACCTGATTGTTTATTTAACATCACATCTTTGTTAGGTATTGCTTTCAATTTCAACAATCTTACTGGAAAAATTCCGGAAAATATAGGGAATTTAGTTAACACTATACAAATTGTAGGGTTTGGGAATAGTTTTGTCGGATCTATACCGGTTTCTATAGGTCGATTAGGATCTTTGAAATCTATTGATTTTAGTCAAAATAAGTTATCTGGCGAGATCCCGAAAGAGATTGGCAACCTAACAAATTTAGAATATGTTCTATTGTTGCATAATTCGTTGACCGGGAAAATTCCTTCAGAGTTGGGTCAATGTAGCAGTCTTGTGTATCTTGAGTTATATGAGAACGAGTTCACTGGAAATATTCCTCATGAGTTAGGAAATTTAGTTCAGTTAGAAACATTGAGGTTGTTTGATAATAACTTGAATTCGACTATACCAGATTCGATTTATAGGTTGAAATCGTTAACGCATTTAGGTTTATCAGAGAATAACTTAGAGGGAACAATTTCTTCCAAGATTGGAAATTTGAGATCTTTAAAAGTGTTGACTCTACATTTAAATAGGTTCACCGGGACGATTCCTTCGCCAATAACAAATTTGAAAAACTTGACATCTTTGTCCATGAGTCAGAATCTTCTTTCAGGTGAAATTCCTTCAAACATAGGTGTGCTTCAAAATCTGAAGTTTCTTGTCTTGAACAATAATTTTTTGCATGGTCCTGTTCCTCCTAGCATTACCAATTGTACTAGTTTGGTTATTGTGAGTTTATCGATTAATTCTTTGACTGGAAACATTCCTGAGGGTTTTTCGAGGCTTCCTAATTTAACTTTCCTGTCTCTCGTATCCAACAAAATGAGCGGTGAAATCCCTGACGATCTTTTCAATTGCTCGAATCTTAGTACTCTAAGTTTGGCGGATAATAACTTCAGTGGTTCGATAAAATCTGGTATCAAGAATCTGTTTAATCTCATGCGTTTGCAGCTGAACGAAAATGCTTTCGTAGGACCGATTCCACCAGAGATCGGTAACTTGAATAAACTCATCACTCTGTCCCTTTCTGAAAATAGATTTTCAGGTCATGTACCGATTGAATTGTCCAAACTTTCTCTCCTTCAAGGACTTGCTCTTCATGACAATGTATTAGAAGGTACAATACCTGATAAACTTTCTGAACTGAAACGATTGACTATACTTTTGCTACAAGAAAACAAGTTGGCTGGTCAAATACCAGAATCTATCTCAAAGCTTGTGATGCTTTCGTACTTAGATTTTCATGGAAACAAACTCAATGGATCCATTCCGAAAAGCATGGGGAAGCTTGATCGTCTTTTAGTGTTGGATCTCTCTCACAACGAGCTCACAGGATCGATTCCTGGAGACGTCATTGCACACTTCAAGGACTTGCAGATGTATCTTAACCTTTCTTACAACCATTTTGTTGGAAATGTTCCGTCTGAGCTAGGGATGTTGGAAATGGCACAAGCGATTGATGTTTCAAACAATAATCTTTCAGGCGTCCTTCCGAAGACACTTGTCGGGTGCAGAAACATGTTTAGTCTTGATTTCTCAGGAAACGATATTTCAGGTCCTATTCCTGCTGAAGTTTTCAGTGGCATGAACATGCTTCAAACCTTTAATCTTTCAAGAAATCATTTTGATAGTGAAATCCCTGAAAGCTTGTCACAGCTTAAGAGTCTTAGTTCCTTAGATCTTTCTCAGAATAACTTGAGGGGAACTATTCCTGAGGGCGTTGCCAATCTTTCCAACCTGATGCAGCTCAACTTTTCTTTCAATCAACTTGAAGGTCCTGTACCTTTGACCGGAATATTTTCACGTATCAATGAATCTAGTATGGTAGGAAACCAGGCTCTTTGCGGTGCAAGATTCCTAAAGCCATGCAAAAAGAATGATCATTCCCTATCCAAGAAGAGCATAGCTATCATTGCTACACTTGGATCTCTTGCTGTACTTCTACTTGTAGTGCTTCCGATTTTATATCTCAACCGAGGTACCATGTTCAGTAATTCTGTAAGGAGTGATGATACTGAGAGTCGCCAACCAGAGTGCGGTTCGGCGTTGGCTCTTAAGAGATTCAGTACAAAGGAGCTAGAAAACGCCACAGATTGTTTCAGCTCAGACTACATCATTGGGGCTAGCAGTTTGAGCACCGTTTACATGGGTCAATTCGGAGACGGTCAGATTGTAGCTATAAAAAGGTTGAATTTGCACCAATTCTCTTCAAATACCGACAAGATCTTCAAGAGAGAAGCCAGCACCTTGTGCCAGCTGAGACATAGGAATTTGGTTAAGATACTTGGATTTGCTTGGGAAAGTGGGAAAACAAAGGCGTTAGTGCTTGAGTACATGGAGAAAGGGAGCTTGGATAGCATCATACATGATAAAGAGGCAGATCAGTCGAGGTGGACATTATCTGAAAGAGTCCGAGTTTTCATTTCTATTGCGAATGGATTGGATTACTTACACTCATGCTATGATTTTCCCATTGTCCACTGTGATCTAAAGCCTTCTAACATCCTCTTAGATAGAGATTTTGAAGCTCATGTCAGTGATTTCGGGACAGCTCGAATACTCGGTCTTCATCTGGAGGATGGTAACGCCCTTTCCTCATCAACAGCTTTGCAAGGCACATTTGGCTATTTGGCCCCAGAATATGCCTACATAACGAAAGTAACGCCGAAAGTGGATGTGTTCAGCTTTGGTATCATAGTAATGGAATTTCTAACAAAAAAAAGGCCAACAGGGCTCTCAGAACCAGGCAGTTTGCCTGATTTAGTGGCAAAAGCCGTTACGAATGGAAAGGAGCAGCTTGTCAACATTGTGGACCCTGAACTGATCACAGAAAACCACGGGGAGGTGTTGGAAGAGCTCTTTAAGCTATCATTGAGTTGCACTCTCTCTGATCCTGAACGTCGACCTACTATGAATGAAGTTTTATCTGCCCTCGTGAAGCTTAAGACGGCTACATAG 3480 0.3902 MFSSLNLNLTIVILISIASTIVSHAQTSPKATIQIEIEALKAFKKSITHDPTKFLANWIDTHPRCNWSGIECTNNSNHVISISLPQLQLQGQISPFLGNISTLQLLDLSSNSFTGQIPIQITLCTQLTSLYLVDNSLSGSIPCELSNLKRLQYLDLGNNFFNGTLPDCLFNITSLLGIAFNFNNLTGKIPENIGNLVNTIQIVGFGNSFVGSIPVSIGRLGSLKSIDFSQNKLSGEIPKEIGNLTNLEYVLLLHNSLTGKIPSELGQCSSLVYLELYENEFTGNIPHELGNLVQLETLRLFDNNLNSTIPDSIYRLKSLTHLGLSENNLEGTISSKIGNLRSLKVLTLHLNRFTGTIPSPITNLKNLTSLSMSQNLLSGEIPSNIGVLQNLKFLVLNNNFLHGPVPPSITNCTSLVIVSLSINSLTGNIPEGFSRLPNLTFLSLVSNKMSGEIPDDLFNCSNLSTLSLADNNFSGSIKSGIKNLFNLMRLQLNENAFVGPIPPEIGNLNKLITLSLSENRFSGHVPIELSKLSLLQGLALHDNVLEGTIPDKLSELKRLTILLLQENKLAGQIPESISKLVMLSYLDFHGNKLNGSIPKSMGKLDRLLVLDLSHNELTGSIPGDVIAHFKDLQMYLNLSYNHFVGNVPSELGMLEMAQAIDVSNNNLSGVLPKTLVGCRNMFSLDFSGNDISGPIPAEVFSGMNMLQTFNLSRNHFDSEIPESLSQLKSLSSLDLSQNNLRGTIPEGVANLSNLMQLNFSFNQLEGPVPLTGIFSRINESSMVGNQALCGARFLKPCKKNDHSLSKKSIAIIATLGSLAVLLLVVLPILYLNRGTMFSNSVRSDDTESRQPECGSALALKRFSTKELENATDCFSSDYIIGASSLSTVYMGQFGDGQIVAIKRLNLHQFSSNTDKIFKREASTLCQLRHRNLVKILGFAWESGKTKALVLEYMEKGSLDSIIHDKEADQSRWTLSERVRVFISIANGLDYLHSCYDFPIVHCDLKPSNILLDRDFEAHVSDFGTARILGLHLEDGNALSSSTALQGTFGYLAPEYAYITKVTPKVDVFSFGIIVMEFLTKKRPTGLSEPGSLPDLVAKAVTNGKEQLVNIVDPELITENHGEVLEELFKLSLSCTLSDPERRPTMNEVLSALVKLKTAT 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04792 1159 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 625 801 - -
Vivi5g04792 1159 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Vivi5g04792 1159 Gene3D Ribonuclease Inhibitor 387 552 IPR032675 -
Vivi5g04792 1159 Pfam Protein kinase domain 878 1150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04792 1159 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 526 624 - -
Vivi5g04792 1159 SMART LRR_typ_2 508 532 IPR003591 -
Vivi5g04792 1159 SMART LRR_typ_2 220 244 IPR003591 -
Vivi5g04792 1159 SMART LRR_typ_2 727 751 IPR003591 -
Vivi5g04792 1159 SMART LRR_typ_2 148 172 IPR003591 -
Vivi5g04792 1159 SMART LRR_typ_2 364 388 IPR003591 -
Vivi5g04792 1159 SMART LRR_typ_2 556 580 IPR003591 -
Vivi5g04792 1159 SMART LRR_typ_2 604 628 IPR003591 -
Vivi5g04792 1159 SMART LRR_typ_2 436 460 IPR003591 -
Vivi5g04792 1159 SMART LRR_typ_2 703 726 IPR003591 -
Vivi5g04792 1159 SMART LRR_typ_2 292 316 IPR003591 -
Vivi5g04792 1159 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 835 952 - -
Vivi5g04792 1159 ProSitePatterns Serine/Threonine protein kinases active-site signature. 999 1011 IPR008271 GO:0004672|GO:0006468
Vivi5g04792 1159 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 383 477 - -
Vivi5g04792 1159 SUPERFAMILY L domain-like 379 477 - -
Vivi5g04792 1159 SUPERFAMILY RNI-like 81 402 - -
Vivi5g04792 1159 PANTHER UNNAMED PRODUCT 389 1085 - -
Vivi5g04792 1159 Gene3D Ribonuclease Inhibitor 629 805 IPR032675 -
Vivi5g04792 1159 SUPERFAMILY L domain-like 529 792 - -
Vivi5g04792 1159 Gene3D Phosphorylase Kinase; domain 1 836 952 - -
Vivi5g04792 1159 ProSiteProfiles Protein kinase domain profile. 874 1155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04792 1159 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 953 1159 - -
Vivi5g04792 1159 SUPERFAMILY Protein kinase-like (PK-like) 855 1152 IPR011009 -
Vivi5g04792 1159 Gene3D Transferase(Phosphotransferase) domain 1 953 1159 - -
Vivi5g04792 1159 Gene3D Ribonuclease Inhibitor 274 386 IPR032675 -
Vivi5g04792 1159 SMART LRR_sd22_2 220 246 - -
Vivi5g04792 1159 SMART LRR_sd22_2 727 750 - -
Vivi5g04792 1159 SMART LRR_sd22_2 316 342 - -
Vivi5g04792 1159 SMART LRR_sd22_2 124 147 - -
Vivi5g04792 1159 SMART LRR_sd22_2 556 579 - -
Vivi5g04792 1159 SMART LRR_sd22_2 364 387 - -
Vivi5g04792 1159 FunFam Piriformospora indica-insensitive protein 2 286 382 - -
Vivi5g04792 1159 Gene3D Ribonuclease Inhibitor 553 628 IPR032675 -
Vivi5g04792 1159 Gene3D Ribonuclease Inhibitor 202 269 IPR032675 -
Vivi5g04792 1159 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 190 285 - -
Vivi5g04792 1159 Gene3D Ribonuclease Inhibitor 33 201 IPR032675 -
Vivi5g04792 1159 PRINTS Leucine-rich repeat signature 607 620 - -
Vivi5g04792 1159 PRINTS Leucine-rich repeat signature 727 740 - -
Vivi5g04792 1159 SMART serkin_6 874 1159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04792 1159 Pfam Leucine rich repeat 659 716 IPR001611 GO:0005515
Vivi5g04792 1159 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 33 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04792 Vivi-Chr5 147031275 147034995 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04792 30 1156 Receptor kinase-like Gene Family AT5G46330 52.895 0.0 1119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vivi5g04792 Pkinase 7.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04792 K13420 - gmx:100817960 1612.43