Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04789 ATGTTATCATCTCTAAACCTTAACTTGACTATAGTCATACTCATTTCAATTGCATCCATTATTGTTTCACATTCTCAAACATCAACCATTGAAATTGAAATTGAAGCATTGAAAGCATTCAAAAAATCCATAACACATGACCCAAACAAAATTCTTGCAAATTGGATTGACACACACCCTCATTGCAATTGGTCAGGCATTGAATGTACCAACAATTCAAACCATGTTATATCAATCTCTCTGCCTCAACTTCAACTCCAAGGTCAGATTTCACCTTTCCTTGGAAACATTTCAACTCTTCAACTTCTTGATTTATCTTCAAACTCATTCACTGGCCAATTTCCAATTCAAATTACTCTATGTACTCAACTCACATCACTTTACCTTGTTGATAATTCTCTCTCGGGTTCGATTCCTTGCGAAATAAGTAACCTAAACATGTTGCAGTATTTGGATATAGGTAATAACTTTTTCAATGGAACCCTACCTGATTGTTTATTCAACATCACTTCTTTGTTAGGTATTGCTTTCAATTTCAACAATCTTACTGGAAAAATTCCGGATAGTATAGGGAATTTAGTTAACGCTATACAGATTGTAGGGTTTGGGAATAGTTTTGTTGGATCTATTCCGGTTTCTATAGGTCGATTAGAATCTTTAAAATCGATTGATTTTAGTCAAAATAAGTTATCTGGCGCGATACCGAAAGAGATTGGAAACCTAACAAATTTAGAATATGTTCAATTGTTTCATAATTCGTTGACCGGGAAAATTCCTTCTGAGTTGGGTCAATGTAGCAATCTTGTGTACCTTGAGTTATATGAGAATGAGTTCACTGGAAATATTCCTCATGAGTTAGGTAATTTAGTTCAGTTGGAAACATTGAGGTTATTTGATAATAACTTGAATTCGACTATACCAGATTCGATTTATAGGTTGAAATCGTTAACTCATTTAGGTTTATCAGAGAATAAGTTAGAGGGGACAATTTCTTCTAAGATTGGGAATTTGAGATCCTTAAAAGTGTTGACTCTGCATTTAAATAAGTTCACCGGGACGATTCCTTTGTCGATAACAAATTTGAGAAACTTGACATCTTTGTCCATGAGTCAGAATCTTCTTTCTGGTGAAATTCCTTCAAACATAGGTGTGCTTCAAAATCTGAAGTTTCTTGTGTTGAACAATAATTTTTTGCATGGTCCTGTTCCTCCTAGCATTACCAATTGTACTAGTTTGGTTAATGTGAGTTTATCGATTAATTCTTTAACCGGAAACATTCCTCAGGGTTTTTCGAGGCTTCCAAATTTAACTTTCCTGTCTCTCGTATCCAACAAAATGAGTGGTGAAATCCCTGACAATCTTTTCAATTGCTCGAATCTTAGTACTCTAAGTTTGGCGGATAATAACTTCAGTGGATCGATAAAATCTGGTATCAAGAATCTGTTTAATCTCATGCGTTTGCAGCTGAACGAAAATGCTTTCGTAGGACCGATTCCACCAGAGATCGGTAACTTGAATAAGCTCATCACTCTATCCCTTTCTGAAAATAGATTTTCCGGTCATATACCGATAGAATTGTCCAAACTTTCTCTCCTTCAGGGACTTGCTCTTCATGACAATGTATTAGAAGGTACAATACCCGATAAGCTTTCTGAACTGAAACAATTGACAATACTTTTGCTGCAAGAAAACAAGTTGGTTGGTCAAATACCAGAATCTATGTCAAAGCTTGAGATGCTTTCGTACTTAGATCTTCATGGAAACAAACTCAATGGATCCATTCCGAAAAGCATGGGGAAGCTTGATCATCTTTTAATGTTGGATCTCTCTCACAACGAGCTCACAGGATCGATTCCTGGAGACGTCATTGCACACTTCAAAGACATGCAAATGTATCTTAACCTTTCTTACAACCATTTTGTTGGAAATGTTCCATCCGAGCTAGGGAAGTTGGAAATGGCGCAAGCGATTGATGTTTCGAACAATAATCTTTCAGGTGTCCTTCCGAAGACACTTGTCGGGTGCAGAAACATGTTCAGTCTTGATTTCTCAGGAAACAATATTTCAGGCCCTATTCCTGCTGAAGTTTTCAGTGGCATGGACTTGCTTCAAACCTTAAATCTTTCAAGAAATCATTTTGATGGTGAGATCCCCGAAAGCTTGTCACAGCTTAAGAGTTTAAGTTCCTTAGATCTTTCTCAGAATAACTTGAAGGGAACCATTCCTGCGGGCTTTGCCAATCTTTCCAACCTGATGCGGCTCAACTTTTCTTTCAATCAACTTGAAGGTTCTGTACCTTTGACCGGAATATTTTCACGTATCAATGAATCTAGTATGGTAGGAAACCAGGCTCTTTGCGGAGCAAGATTCCTAAGGCCATGCAGAGAGAATGACCATTCCCTATCCAAGAAGAGCATAGCTATCGTTGCTACACTTGGATCTCTTGCTGTACTTCTACTTGTAGTGCTTCTGATTTTATATCTCAACCGAGGCACGATGTTTGGTAATTCTGTAAAGAGTGATGATACTGAGAGTCACCAACCAGAGTGCGGTTCAGCGCTGGCTCTTAAGAGATTCAGTCCAAAGGAGTTAGAAAACGCCACAGGTTGTTTCAGCTCAGACTACATCATTGGTGCTAGCAGTTTGAGCACCGTTTACAAGGGTCAATTCGGAGACGGTCAGGTTGTAGCCATAAAAAGGTTGAATTTGAACCAATTCTCTGCAAATACCGACAAGATCTTCAAGAGAGAAGCCAGCACCTTGTGCCAGCTGAGACATAGGAATTTGGTTAAGATACTTGGATATGCTTGGGAGAGTGGGAAAACAAAGGCTTTAGTTCTTGAGTACATGGAGAATGGGAACTTGGATAGCATCATACATGATAGAGAGGCAGATCAATCGAGGTGGACATTATCTGAAAGAGTCCGAGTTTTCATTTCTATTGCGAGTGGATTGGATTACTTGCACTCAGGCTATGATTTTCCTATTGTCCACTGTGATCTAAAGCCTTCTAACATCCTTTTAGATAGAGATTTTGAAGCTCACGTCAGCGATTTCGGGACAGCTCGAATACTCGGTCTTCATCTGGAGGATGGTAATGCCCTTTCCTCATCAACGGCTTTGCAAGGCACAGTTGGCTATTTGGCACCAGAATATGCGTACATAACGAAAGTAACGCCTAAAGTGGACGTGTTCAGCTTTGGTATCATAATAATGGAATTTCTAACAAAAATAAGGCCAACAGGGCTCGCAGAACCAGACAGTTTGCATGATTTAGTGGCAAAAGCCGTTGCGAATGGAAAGGAGCAGCTTGTCAACATTCTGGACCCTGAACTTATCACCAAAAACCACGGGGAGGTGTTGGAAGAACTCTTTAAGCTATCATTGTGCTGCACTCTCTCTGATCCTGAACGTCGGCCTACTATGAATGAAGTTTTATCTGCCCTTGTGAAGCTTAAGGCAGAAAAATAG 3471 0.3907 MLSSLNLNLTIVILISIASIIVSHSQTSTIEIEIEALKAFKKSITHDPNKILANWIDTHPHCNWSGIECTNNSNHVISISLPQLQLQGQISPFLGNISTLQLLDLSSNSFTGQFPIQITLCTQLTSLYLVDNSLSGSIPCEISNLNMLQYLDIGNNFFNGTLPDCLFNITSLLGIAFNFNNLTGKIPDSIGNLVNAIQIVGFGNSFVGSIPVSIGRLESLKSIDFSQNKLSGAIPKEIGNLTNLEYVQLFHNSLTGKIPSELGQCSNLVYLELYENEFTGNIPHELGNLVQLETLRLFDNNLNSTIPDSIYRLKSLTHLGLSENKLEGTISSKIGNLRSLKVLTLHLNKFTGTIPLSITNLRNLTSLSMSQNLLSGEIPSNIGVLQNLKFLVLNNNFLHGPVPPSITNCTSLVNVSLSINSLTGNIPQGFSRLPNLTFLSLVSNKMSGEIPDNLFNCSNLSTLSLADNNFSGSIKSGIKNLFNLMRLQLNENAFVGPIPPEIGNLNKLITLSLSENRFSGHIPIELSKLSLLQGLALHDNVLEGTIPDKLSELKQLTILLLQENKLVGQIPESMSKLEMLSYLDLHGNKLNGSIPKSMGKLDHLLMLDLSHNELTGSIPGDVIAHFKDMQMYLNLSYNHFVGNVPSELGKLEMAQAIDVSNNNLSGVLPKTLVGCRNMFSLDFSGNNISGPIPAEVFSGMDLLQTLNLSRNHFDGEIPESLSQLKSLSSLDLSQNNLKGTIPAGFANLSNLMRLNFSFNQLEGSVPLTGIFSRINESSMVGNQALCGARFLRPCRENDHSLSKKSIAIVATLGSLAVLLLVVLLILYLNRGTMFGNSVKSDDTESHQPECGSALALKRFSPKELENATGCFSSDYIIGASSLSTVYKGQFGDGQVVAIKRLNLNQFSANTDKIFKREASTLCQLRHRNLVKILGYAWESGKTKALVLEYMENGNLDSIIHDREADQSRWTLSERVRVFISIASGLDYLHSGYDFPIVHCDLKPSNILLDRDFEAHVSDFGTARILGLHLEDGNALSSSTALQGTVGYLAPEYAYITKVTPKVDVFSFGIIIMEFLTKIRPTGLAEPDSLHDLVAKAVANGKEQLVNILDPELITKNHGEVLEELFKLSLCCTLSDPERRPTMNEVLSALVKLKAEK 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04789 1156 Gene3D Ribonuclease Inhibitor 627 802 IPR032675 -
Vivi5g04789 1156 ProSiteProfiles Protein kinase domain profile. 871 1152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04789 1156 FunFam Inactive leucine-rich repeat receptor-like protein kinase 453 548 - -
Vivi5g04789 1156 Gene3D Ribonuclease Inhibitor 551 626 IPR032675 -
Vivi5g04789 1156 Pfam Protein kinase domain 875 1147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04789 1156 SMART LRR_sd22_2 313 339 - -
Vivi5g04789 1156 SMART LRR_sd22_2 385 417 - -
Vivi5g04789 1156 SMART LRR_sd22_2 577 603 - -
Vivi5g04789 1156 SMART LRR_sd22_2 361 384 - -
Vivi5g04789 1156 SMART LRR_sd22_2 433 456 - -
Vivi5g04789 1156 SMART LRR_sd22_2 217 243 - -
Vivi5g04789 1156 SMART LRR_sd22_2 724 750 - -
Vivi5g04789 1156 SMART LRR_sd22_2 121 147 - -
Vivi5g04789 1156 SUPERFAMILY L domain-like 526 789 - -
Vivi5g04789 1156 SUPERFAMILY RNI-like 222 614 - -
Vivi5g04789 1156 Gene3D Phosphorylase Kinase; domain 1 834 949 - -
Vivi5g04789 1156 PRINTS Leucine-rich repeat signature 724 737 - -
Vivi5g04789 1156 PRINTS Leucine-rich repeat signature 604 617 - -
Vivi5g04789 1156 SMART LRR_typ_2 241 265 IPR003591 -
Vivi5g04789 1156 SMART LRR_typ_2 145 169 IPR003591 -
Vivi5g04789 1156 SMART LRR_typ_2 601 625 IPR003591 -
Vivi5g04789 1156 SMART LRR_typ_2 748 773 IPR003591 -
Vivi5g04789 1156 SMART LRR_typ_2 361 385 IPR003591 -
Vivi5g04789 1156 SMART LRR_typ_2 433 457 IPR003591 -
Vivi5g04789 1156 SMART LRR_typ_2 289 313 IPR003591 -
Vivi5g04789 1156 SMART LRR_typ_2 553 577 IPR003591 -
Vivi5g04789 1156 SMART LRR_typ_2 217 240 IPR003591 -
Vivi5g04789 1156 SMART LRR_typ_2 505 529 IPR003591 -
Vivi5g04789 1156 SMART LRR_typ_2 724 747 IPR003591 -
Vivi5g04789 1156 SMART LRR_typ_2 700 723 IPR003591 -
Vivi5g04789 1156 SUPERFAMILY L domain-like 32 303 - -
Vivi5g04789 1156 SUPERFAMILY Protein kinase-like (PK-like) 851 1149 IPR011009 -
Vivi5g04789 1156 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 30 187 - -
Vivi5g04789 1156 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 242 452 - -
Vivi5g04789 1156 Gene3D Transferase(Phosphotransferase) domain 1 950 1156 - -
Vivi5g04789 1156 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 624 798 - -
Vivi5g04789 1156 Gene3D Ribonuclease Inhibitor 385 548 IPR032675 -
Vivi5g04789 1156 Pfam Leucine rich repeat 656 713 IPR001611 GO:0005515
Vivi5g04789 1156 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 950 1156 - -
Vivi5g04789 1156 Gene3D Ribonuclease Inhibitor 30 197 IPR032675 -
Vivi5g04789 1156 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 833 949 - -
Vivi5g04789 1156 FunFam LRR receptor-like serine/threonine-protein kinase 551 623 - -
Vivi5g04789 1156 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Vivi5g04789 1156 CDD STKc_IRAK 877 1152 - -
Vivi5g04789 1156 ProSitePatterns Serine/Threonine protein kinases active-site signature. 996 1008 IPR008271 GO:0004672|GO:0006468
Vivi5g04789 1156 SMART serkin_6 871 1150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04789 1156 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 406 1150 - -
Vivi5g04789 1156 Gene3D Ribonuclease Inhibitor 198 380 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04789 Vivi-Chr5 147014661 147018467 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04789 29 1155 Receptor kinase-like Gene Family AT5G46330 53.947 0.0 1140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vivi5g04789 Pkinase 4.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04789 K13420 - gmx:100788119 1645.94