Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04784 ATGGCTCTCTTCCTCCGCCACGAAACCACCGCTGGCTGCGCCCTGTTCGAGGCTCATGGAATCGACGAAATTGGACAGAACATTGAAGTTGTTTGGAACTCTGTTTCTGATTTGACCAGGTTCGATAAGGTTGTTCGGAACTCCGTTTCCAATTTGACCAGGTTCGGTAAGGTTTGTAAGCCTCACTCTTTCAACCCTTTCACCTCTGCTCTTGAAGACCTGGAACAAATTAATGTCGTCTCCGAAGGTATTCTGACTGATGAGCTGAGAATTGTTTCAGAGTGGAAGCAATGTTTCACTATGCCACCGCCATTAAAGCCAACCCACTTTATCTCTGATGACTTTGACGACGAGTTGTTGTTGTTTCCGACAGATGCAATACGATTCAACACTGCGGTAGATGCTTTGAGTCCTAACACCGGCCCATATGACCCAGGACCACTCAAACCTCCACTCACATCCACAAAGAGGATTTCTACAAGGAATTTGTCAGACAGACAGTCATCGATAATCTCAACGAATTCAAAAATTCGGATTTGTGCACCTACCCACAACCTTGCACCCTCTCATGATGTTGATGGTTTGATGGAGAAGAAGCAACTATTACCAATTTCAGATCTGGGCACTATCTCAAAATCATTTCCAACAGAGTTTGTTAGCTCCAAAGACGCTCACATCCTCCCAAAATTTCGTCTTCATAGTAAGAGAGCTGAAACACATATATCACTCATAGAGTATTCGGCAAAAGAAACAGGAAACTTTAAATCATTGTTGTTAAAAGAGTGGAAGTGGTATTTGAAGGACATGAAGTATGTGATTCGTGCTACCCATGCTGAAATAGCCCAAACTGCAAATCCTTTGCCAAAGCCGCCGCCACTTGTGTTGTGTTGGTCAGAACCACCCATTCATCACCACACAATGACGGAAAATAGAAAGACATGGATTGGCAAAACAATGGAAGATTTCCTTCAACAGAGTTTGTGGACAAGATATTTGACATCAATCTATTGTTCCATCACTACTTTGACAACAGTTGGTTATGTAGATTTGCATCCGGTGAACAAAAGGGAAACGCTCTTTGTCATCTCTTACATGCTCTTTAATCTAAGATTAACAGCTTATGTGATTGGTAAGATGACTAACTTAGTTGTCCACGGCAGAAATCTAATTAGAAAAGTCAGGGATACGATACAAGTTGCATCAAGTTTTTCCCAGAGGAACCAATTGCTGCCTCTCTTACAAGATCAAATGCTTTCTCATTTGTGTTTGAAGTTTAGAACAGACTCAGAAGGTTTGCAGAAACAAGAGACGCTCGATTCTCTTTCGAAAGCTATCCGATCAAGCATTTCACATTATCTTTTTTATAATTTGATGGATAAGATCTATTTATTCAATGGGGTTTCAAAAGACTTGCTCTTTCAATTGGTATGGGAGATGAAGCCAAAGTATTTTCCACCAACAGAATGTGTCATATTGCAAACCGAAGCTCCAATTGATTTTTACATTATAGTCACCGGAGCTGTGGATTTACTATTTCTAAAAGGCGGGGTTGAACATGCTGTCGGGGAAGCAAAAACAGGAGAACTTTGTGTCAAAATTGGTGTACTTTGCTATAAGCCACAACATTTTACCGTTCGAACTAAGCGATTAAGTCAACTTTTGAGGTTCAACCGTACCACCTTCATGAATATTATTCAAGCTAATGTTGGCGACAGAACCATAATCATGAACAACCTTCTTCAGCAATTGAAAGAGCTTAATGATCCGATCATAGAGGGAGTTTTGGTCGAGACGGGAAACATGTTAACTCGCGGAAGAATAGACCTACCGGTGAGTCTATATTTTACAGCATCAAAAGAAGAGGATTTCTTGTTATATGAACTACTAAAACGAGGTTTGAATCCAAATGAATCTAACAACAATGGAAGAACAATAATGCATATAGCAGCATCTAAAGGAAAAGAAAACTATGTTTTGCTTCTGTTATATTATGGAGCAAATCCCAACAGTCGAGATTCATATGGAAATTTAGCACTATGGGAGGCTATACTTGGTGGACATGAAACAGTAACAAAACTTTTGGTACAAAATGGTGCTACCTTTCAAAGTGGTCATGTTGTTGCTAAGAATAAGGATATGTTGAAAAGGAACATGATTACCCATGTTTTGAATTATGTAGGTTTTGTGTGTCATGAGTATTCCAAAGCTGATTTTATATATAGAACTTTGTGGTTACAAGATAATCCTAGTGAGGTTCTACATATGTGTGTGTTCTATCATGCAAGATTGGTTCAATATTGTGGGAATGGTTTCAAAGAAAAATTTAAAGGTCTACAATCAAGTTGGCTTCTGTTGAAGTTTATGCAAATTTCAAACTCAACTTTTAGAGACAACATTGACTCATATCTTTGGAAAGAAATGTTTTTAGTGGCTCGAGTTGTAAAGATTAAACTGTCTCAGTTTAAGAGGTGGGATCCGGGAAGAAGAAAAAAAAAATTGTGA 2502 0.3905 MALFLRHETTAGCALFEAHGIDEIGQNIEVVWNSVSDLTRFDKVVRNSVSNLTRFGKVCKPHSFNPFTSALEDLEQINVVSEGILTDELRIVSEWKQCFTMPPPLKPTHFISDDFDDELLLFPTDAIRFNTAVDALSPNTGPYDPGPLKPPLTSTKRISTRNLSDRQSSIISTNSKIRICAPTHNLAPSHDVDGLMEKKQLLPISDLGTISKSFPTEFVSSKDAHILPKFRLHSKRAETHISLIEYSAKETGNFKSLLLKEWKWYLKDMKYVIRATHAEIAQTANPLPKPPPLVLCWSEPPIHHHTMTENRKTWIGKTMEDFLQQSLWTRYLTSIYCSITTLTTVGYVDLHPVNKRETLFVISYMLFNLRLTAYVIGKMTNLVVHGRNLIRKVRDTIQVASSFSQRNQLLPLLQDQMLSHLCLKFRTDSEGLQKQETLDSLSKAIRSSISHYLFYNLMDKIYLFNGVSKDLLFQLVWEMKPKYFPPTECVILQTEAPIDFYIIVTGAVDLLFLKGGVEHAVGEAKTGELCVKIGVLCYKPQHFTVRTKRLSQLLRFNRTTFMNIIQANVGDRTIIMNNLLQQLKELNDPIIEGVLVETGNMLTRGRIDLPVSLYFTASKEEDFLLYELLKRGLNPNESNNNGRTIMHIAASKGKENYVLLLLYYGANPNSRDSYGNLALWEAILGGHETVTKLLVQNGATFQSGHVVAKNKDMLKRNMITHVLNYVGFVCHEYSKADFIYRTLWLQDNPSEVLHMCVFYHARLVQYCGNGFKEKFKGLQSSWLLLKFMQISNSTFRDNIDSYLWKEMFLVARVVKIKLSQFKRWDPGRRKKKL 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04784 833 Pfam Ankyrin repeats (3 copies) 620 700 IPR002110 GO:0005515
Vivi5g04784 833 CDD CAP_ED 463 576 IPR000595 -
Vivi5g04784 833 ProSiteProfiles Ankyrin repeat profile. 641 673 IPR002110 GO:0005515
Vivi5g04784 833 Pfam NOP5NT (NUC127) domain 7 83 IPR012974 -
Vivi5g04784 833 SMART ANK_2a 641 670 IPR002110 GO:0005515
Vivi5g04784 833 SMART ANK_2a 674 703 IPR002110 GO:0005515
Vivi5g04784 833 SUPERFAMILY Ankyrin repeat 614 700 IPR036770 -
Vivi5g04784 833 Gene3D - 305 384 - -
Vivi5g04784 833 ProSiteProfiles Ankyrin repeat region circular profile. 641 672 - -
Vivi5g04784 833 SMART cnmp_10 463 580 IPR000595 -
Vivi5g04784 833 PANTHER POTASSIUM CHANNEL AKT1 308 709 IPR045319 GO:0005249|GO:0006813
Vivi5g04784 833 FunFam Potassium channel KAT2 451 587 - -
Vivi5g04784 833 Pfam Ion channel 325 383 IPR013099 -
Vivi5g04784 833 SUPERFAMILY cAMP-binding domain-like 392 583 IPR018490 -
Vivi5g04784 833 Gene3D Jelly Rolls 428 588 IPR014710 -
Vivi5g04784 833 Gene3D - 610 756 IPR036770 -
Vivi5g04784 833 Pfam Cyclic nucleotide-binding domain 482 567 IPR000595 -
Vivi5g04784 833 ProSiteProfiles cAMP/cGMP binding motif profile. 463 582 IPR000595 -
Vivi5g04784 833 SUPERFAMILY Voltage-gated potassium channels 317 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04784 Vivi-Chr5 146813158 146815659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04784 312 706 Ion Channels AT2G26650 67.342 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04784 K21867 - zju:107432387 587.8