Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04780 ATGGGTCGTAAAAAAATAGAGATAAAATTGGTGAAGAACATAGAAGCTAGGTATGTCACATTTTCTAAAAGAAGGAAAGGTCTCTTTAAGAAAGCAAGTGAGTTATCAATTCTTTGTGGGGCTAGAGTTGGATTGCTTGGATTCAGTCCTAGTGGTAAGCCATTTGCTTTTGGTTCTCCATCTTTTCAAGTTGTGATTGATGAGTACCTTCATGAAGGAGGTGTTGAGACTTTTGAAAATGGAGAGATTGGCAATCTCAATGAAGAACTTAAAGATTTGAAAAAAGAGATAAAGGTGGAGGACAAAAAGATTGAAGAAGTTGACAAAGGTATCATCCCTACCGATCTTAGTTTGGAGGAACTTCAAAAAGTGAAGACTTCATTGAAAGAGCTCCAAGGTGAAATTGAGGCAGCTTCATCTTTACTTCTCCTTGCAAAAAAACCTGTGTTTATTATTCAAGGTTGA 465 0.3656 MGRKKIEIKLVKNIEARYVTFSKRRKGLFKKASELSILCGARVGLLGFSPSGKPFAFGSPSFQVVIDEYLHEGGVETFENGEIGNLNEELKDLKKEIKVEDKKIEEVDKGIIPTDLSLEELQKVKTSLKELQGEIEAASSLLLLAKKPVFIIQG 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04780 154 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi5g04780 154 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Vivi5g04780 154 Coils Coil 121 141 - -
Vivi5g04780 154 Coils Coil 76 110 - -
Vivi5g04780 154 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Vivi5g04780 154 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi5g04780 154 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi5g04780 154 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi5g04780 154 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi5g04780 154 FunFam Agamous-like MADS-box protein AGL62 13 77 - -
Vivi5g04780 154 PANTHER MADS BOX PROTEIN 3 136 - -
Vivi5g04780 154 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04780 Vivi-Chr5 146724012 146724536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04780 1 147 Type I MADS-box Gene Family AT2G34440 36.416 7.51e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi5g04780 SRF-TF 2.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04780 - - mtr:25493407 159.073