Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04779 ATGGAGCCAAAGAAGAAAACAAGAGGAAAACAAAAGCTACAAATGAAGAAGATTGAGAATCTAGACGATCGTTTCATCACATTTACCAAAAGAAAAAATGGTATCCACAACAAGGCCTCAGAATTATCAACACTTTGTGGGGCTAAAGTTGATATTCTTATGATTTCTCCAAGTGGGAATCCATTCTGTTATGGAGAGCCTTCTTCAAAATCTTTTGCAAGAACAATCTTGAAGGAAGAAACTCCTTCAATTGAAGATCTAATGAAGAGACAAATGGTTGAACAACTTAATATAAAAAATGATCAATTGGTTGATGAAATCCATGTCGCAAAAGCTCAAAGGGAAACATTGAGAGCATCAAATAGTTCTGGTTGGTGGGGGGTGAAAGAGAAAGGTGGGTGTGATAGTAAAAAAGTTGAACGTATAAAGAATATCACACATCAAATGATAAATGAAGTTATAAGCAAGGGAGGAGAGATTGATTCTCATGCAAATTATTTTTTAGATAAATGGAATGGATTCGATTCAAACCCTACTTGTCAATCTTGGAGCAATAATAATGGTTATGGAGTTAAAGCAAGTGATGGAACCAACCTTTATGATCCAAAAGACAAAGGTAAATCTGTTGTTTTTGGTGGAGCAAGCGGGAGTGGAAGTCGGAGTTAG 666 0.3589 MEPKKKTRGKQKLQMKKIENLDDRFITFTKRKNGIHNKASELSTLCGAKVDILMISPSGNPFCYGEPSSKSFARTILKEETPSIEDLMKRQMVEQLNIKNDQLVDEIHVAKAQRETLRASNSSGWWGVKEKGGCDSKKVERIKNITHQMINEVISKGGEIDSHANYFLDKWNGFDSNPTCQSWSNNNGYGVKASDGTNLYDPKDKGKSVVFGGASGSGSRS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04779 221 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Vivi5g04779 221 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vivi5g04779 221 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vivi5g04779 221 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vivi5g04779 221 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vivi5g04779 221 Gene3D - 20 100 IPR036879 GO:0003677|GO:0046983
Vivi5g04779 221 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vivi5g04779 221 MobiDBLite consensus disorder prediction 194 221 - -
Vivi5g04779 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vivi5g04779 221 Coils Coil 93 120 - -
Vivi5g04779 221 PANTHER MADS BOX PROTEIN 10 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04779 Vivi-Chr5 146716669 146717603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04779 1 158 Type I MADS-box Gene Family AT1G28460 33.918 9.83e-22 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi5g04779 SRF-TF 6.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04779 - K12412 qsu:112030633 118.627