Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04775 ATGGCGAAAAAGGCTAAAGCTTCTCCACCCTCTGCTTCCGCCTCCACCCCCACCTCCTCCGGCAAACTAGTGTTGAGGATTAAATCAAATGAGGGAATGAAGAGATCCGTGCGGCAGACTAAGTCAAGAGAGATAACCAAAGCAAAGCAAAGAAAGAACAAGCAAAAGATTGATGCTAAGAAGCCAAAGAAACCCCCCACTGCTTTCTTCTACTTCATGGAGGATTTTCGGAAAGAGTTTCAAGAGCAGAACCCAGATGTAAAGTCAATGCGTGATGTTGGCAAGGCATGTGGAGATAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGATATAGCAACGGAAAAACGTGCAGAATTTGATAGAGCAATGACAGAGTATAACAAGAAAATGGAAAACGGTGATTATGAAGAAAGTGATGAGGAGTCAGAGTATGACGAGTAA 453 0.426 MAKKAKASPPSASASTPTSSGKLVLRIKSNEGMKRSVRQTKSREITKAKQRKNKQKIDAKKPKKPPTAFFYFMEDFRKEFQEQNPDVKSMRDVGKACGDKWKTMTYEEKVQYYDIATEKRAEFDRAMTEYNKKMENGDYEESDEESEYDE 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04775 150 MobiDBLite consensus disorder prediction 28 46 - -
Vivi5g04775 150 MobiDBLite consensus disorder prediction 1 63 - -
Vivi5g04775 150 SMART hmgende2 61 132 IPR009071 -
Vivi5g04775 150 MobiDBLite consensus disorder prediction 9 25 - -
Vivi5g04775 150 Gene3D High mobility group box domain 45 147 IPR036910 -
Vivi5g04775 150 MobiDBLite consensus disorder prediction 131 150 - -
Vivi5g04775 150 Pfam HMG (high mobility group) box 62 131 IPR009071 -
Vivi5g04775 150 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 62 131 IPR009071 -
Vivi5g04775 150 CDD HMG-box_AtHMGB1-like 63 123 - -
Vivi5g04775 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 35 147 IPR031061 -
Vivi5g04775 150 SUPERFAMILY HMG-box 47 133 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04775 Vivi-Chr5 146623959 146627470 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vivi5g04775 HMG_box 2.6e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04775 - - mtr:25493401 205.682