Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04762 ATGGTCGATGAAGAACCAATGCCTACTCGCTGGTCTTTCCAGGAGTTCAAAACGTATTATGATATTAGGCTTGGTAGGAAGAAACCGGTGGAGAATGGTGAGACTGCTGATAAAGCGGTTAGTAATGGAAATTCTTCTGGTATAGCATCTAATGGCAATTTTAATGTCAAAATAACACCAGATAAGGCTATTTATGAGCAGTTCCAAAGCCAGGGGCGGAATCCAGTGCATGCAAATGGTTTTGCACCAAACATTATTAATGAAAAGCCGCCCAAGTCTTTGCTTCCACCTTTGGAGTCTGCTGAAATGCGTACTTTAGCAGAGAGCTTAAGTAGGGATATTATTCGTGGGAATCCAAATGTGAAATGGGAAAGCATCAAGGGGTTAGAGAATGCCAAACGTTTATTGAAAGAAGCTGTAGTGATGCCGATTAAATATCCCAAGTACTTTACTGGTTTGTTATCACCATGGAAGGGCATTCTTCTTTTTGGCCCCCCGGGGACGGGAAAGACAATGCTTGCTAAGGCAGTTGCAACAGAGTGCAATACTACATTTTTTAATATTTCAGCATCGTCTGTTGTCAGCAAATGGCGAGGTGATTCGGAGAAGTTAGTTAAAGTGTTATTTGAGCTTGCAAGGCATCATGCGCCTGCAACAATATTTCTTGACGAAATTGATGCAATCATTAGTCAGCGTGGTGAGGCACGCAGTGAACACGAAGCAAGTAGACGGTTAAAAACTGAATTACTCATTCAGATGGATGGTTTAACACGGACGGATGAACTTGTTTTTGTTTTGGCGGCAACTAATCTTCCCTGGGAATTGGATGCAGCCATGCTTAGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCAGAACCTGAAGCAAGAAGATCAATGTTTGAGGAACTCCTTCCTCGGCAGCCTGATGAGGAACAGATTCCCTATGATTTACTCGTGGACCGGACAGAAGGTTATTCAGGCTCGGATATCCGCCTACTTTGTAAAGAAACGGCAATGCAGCCATTGAGACGCTTAATGTCACAACTTGAACAGGAACAAAATGTGGTGCCTGAAGAAGAGTTGCCAAAAGTTGGACCAGTCAGGCCTGAAGATGTCGAGGCAGCTTTAAGGAACACACGGCCATCTGCTCATCTCCTTGCCCACAAATACGACAAGTTTAATGCTGATTATGGTAGTCAAATACTTCAATGA 1215 0.4346 MVDEEPMPTRWSFQEFKTYYDIRLGRKKPVENGETADKAVSNGNSSGIASNGNFNVKITPDKAIYEQFQSQGRNPVHANGFAPNIINEKPPKSLLPPLESAEMRTLAESLSRDIIRGNPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRSMFEELLPRQPDEEQIPYDLLVDRTEGYSGSDIRLLCKETAMQPLRRLMSQLEQEQNVVPEEELPKVGPVRPEDVEAALRNTRPSAHLLAHKYDKFNADYGSQILQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04762 404 Pfam AAA+ lid domain 317 353 IPR041569 -
Vivi5g04762 404 CDD RecA-like_VPS4-like 126 289 - -
Vivi5g04762 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 383 IPR027417 -
Vivi5g04762 404 PANTHER AAA DOMAIN-CONTAINING 53 400 - -
Vivi5g04762 404 FunFam Katanin p60 ATPase-containing subunit A-like 2 292 380 - -
Vivi5g04762 404 Gene3D - 119 394 IPR027417 -
Vivi5g04762 404 Pfam ATPase family associated with various cellular activities (AAA) 160 290 IPR003959 GO:0005524|GO:0016887
Vivi5g04762 404 SMART AAA_5 156 293 IPR003593 GO:0016887
Vivi5g04762 404 FunFam Katanin p60 ATPase-containing subunit A-like 2 119 303 - -
Vivi5g04762 404 Gene3D - 292 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04762 Vivi-Chr5 146438917 146446570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04762 52 363 Calmodulin-binding Proteins AT3G56690 31.562 2.77e-33 130