Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04733 ATGGCTGAAAACCATTCCCATTCTCACTCTCAATCTCCTATACCATGTCATGATCACGAACAAGTAGCTGGTTTTGATTGGATGGTTCTAGTGGCAGCTATTTTATGTGCTATTGTTTGTGCTCTTGGTCTTAATACTATGTTACAATGTGTTTTTCAATGTGTTGGTCGTGTACTTACAGAGCCTGTGCAATGGATTTCTTCTAGGAGGTTGAATACCGGAATCAAGGAAAAAGACACGGTAGCTTTGCCAACTTCAACATATAGTTCTCATGACTCAGGTTCTCCATCTTCAGCTTCTAGTTGTGTCATTTGTTTGGCTGAATTCTGTAATGGTGACCAAATAAGGTTCCTGCCAAAATGCAATCATCATTTCCATGTGGTTTGTATTGATAAGTGGTTGTTGTCTCATTCTTCTTGCCCTACTTGCAGGAATCTCACTCGAGTCTAG 450 0.4022 MAENHSHSHSQSPIPCHDHEQVAGFDWMVLVAAILCAIVCALGLNTMLQCVFQCVGRVLTEPVQWISSRRLNTGIKEKDTVALPTSTYSSHDSGSPSSASSCVICLAEFCNGDQIRFLPKCNHHFHVVCIDKWLLSHSSCPTCRNLTRV 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04733 149 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Vivi5g04733 149 PANTHER RING-H2 FINGER PROTEIN ATL78 18 145 IPR044602 GO:0016567|GO:0016740
Vivi5g04733 149 SMART ring_2 102 143 IPR001841 -
Vivi5g04733 149 SUPERFAMILY RING/U-box 101 146 - -
Vivi5g04733 149 Pfam Ring finger domain 101 144 IPR001841 -
Vivi5g04733 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 148 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04733 Vivi-Chr5 146104224 146104673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04733 9 146 C3H Transcription Factor Family AT2G17450 38.194 7.16e-30 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04733 - - tpra:123918739 246.128