Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04715 ATGAGTTCATGCTCAGGAGACAAGCAAAACATGCATGAACAAACTGGTTGCTTTGATCCCAACACAATGGATGAAGGTATTCAAAATTCTCTTAAAGATAATAACTTTTCCCAAACTCACCCAAATCAAGTGGTTGAAGGTAATACCAATAATAGTCTTGAAGAGAATTTCAGGCCTTCTGAGGAGGGATTCTCTTATCATAATCATAATCCGCAGCACCTTGATAACCATTTGGTGCAAGAGGTGTATCAGAACAACTCAACTTGGGATCCTAATGTTCATGAGTTGCAAAATATGGATTATGCTAATCACCAAGAACATCACCAACTACATGAACAACAGTTTCAACAAATTGTTGAGCCGCAAAACCATAACCAAACCTACAATCCGTCGAATATACTCGACCCTCATTACCCTTCACCTGATCTTTTAAACCTTCTCCATTTACCTAGATGCTCGGCTTCATCTTTTCTCACAAACCCGAATCAAAAACCGCCAAATTTTCATAACTCGATGAGTTTTCTTGGAGATCTTCCGATTGGATCATCGGACAATACAAGTGGATCGTCGGTTTTGTATGATCCTCTATTTCCTTTGAACCTTCCTCCACAGCCACCGGCCCTCAGAGAGTTGTTTCAATCTCTGCCTCGCGGGTATAGCATGCCGACTAGCTCGAGGAATGGTTCTCTTTTCGGTGGAGGAGATGAGATGGAAGGAGATGGAGACATGGGAGTGCTGGAATTCAATAGGGTTGCTGCTAATGTTGGTAAAGGAAGAGGAGGAAAAGCTACAAAACATTTTGCAACAGAGAAACAAAGAAGAGAGCAATTGAATGGGAAGTACAAAATCTTGAGGGGACTCATCCCAAATCCCACTAAGGTTGATAGAGCATCTGTGGTTGGAGATGCTATTGAGTATATAAGAGAGCTGATTAGAACAGTGAATGAGCTGAAACTATTGGTGGAGAAGAAAAGACATGGAAGGGAAATGTGCAAGACACTTAAAGCTGAAGATGCTGCTGCAGAAAGCTGTAACATAAAGCCTTTTGGTGATCCAAATGGAAGCATAAGGACTTCATGGCTGCAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGGATTGTCGACGATGATGTTACTATCAAACTGTTTCAGAGGAAGAAAGTTAATTGTTTACTGTATGTCTCCAAGGTTCTGGATGAACTTCAGCTGGAACTTCGCCATGTTGCAGGTGGACATGTAGGTGAATATTGCAGTTTCTTGTTCAACAGCAAGGTAAGTGAAGGTTCATCGGTTTATGCAAGTGCTATAGCCAACAAGGTGATTGATATTCTGGACACCCAATATGCTGCAGGTGTTCCATATACAAGTAGGCTGTAG 1380 0.4174 MSSCSGDKQNMHEQTGCFDPNTMDEGIQNSLKDNNFSQTHPNQVVEGNTNNSLEENFRPSEEGFSYHNHNPQHLDNHLVQEVYQNNSTWDPNVHELQNMDYANHQEHHQLHEQQFQQIVEPQNHNQTYNPSNILDPHYPSPDLLNLLHLPRCSASSFLTNPNQKPPNFHNSMSFLGDLPIGSSDNTSGSSVLYDPLFPLNLPPQPPALRELFQSLPRGYSMPTSSRNGSLFGGGDEMEGDGDMGVLEFNRVAANVGKGRGGKATKHFATEKQRREQLNGKYKILRGLIPNPTKVDRASVVGDAIEYIRELIRTVNELKLLVEKKRHGREMCKTLKAEDAAAESCNIKPFGDPNGSIRTSWLQRKSKDSEVDVRIVDDDVTIKLFQRKKVNCLLYVSKVLDELQLELRHVAGGHVGEYCSFLFNSKVSEGSSVYASAIANKVIDILDTQYAAGVPYTSRL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04715 459 Gene3D - 259 336 IPR036638 GO:0046983
Vivi5g04715 459 PANTHER TRANSCRIPTION FACTOR BHLH91 9 451 IPR045895 GO:0006355|GO:0048658
Vivi5g04715 459 CDD bHLH_AtMYC1_like 266 335 IPR045896 -
Vivi5g04715 459 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 310 IPR011598 GO:0046983
Vivi5g04715 459 SMART finulus 267 316 IPR011598 GO:0046983
Vivi5g04715 459 Pfam Helix-loop-helix DNA-binding domain 264 310 IPR011598 GO:0046983
Vivi5g04715 459 MobiDBLite consensus disorder prediction 1 72 - -
Vivi5g04715 459 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 259 330 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04715 Vivi-Chr5 145973691 145975522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04715 11 454 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 39.744 2.90e-91 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi5g04715 HLH 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04715 - - vvo:131603013 898.271