Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04713 ATGGAAACAGAGAAGAATATGATTATGGAGATTGCTAATAATGCTTTGGAGGAGTTAACAAGGTTGATAAAATTGAATGAACCGTTCTGGTTTAGGTCAACAAAGACAGACAGATTCGTTCTTCAACGCGAAACTTATGAGAAGATGTATAAAAAGAGCAGCGTCTTAAATGGACCTGATGCACGTATTGAGGTCTCAAAGGAATCACTAGTTGTGAGCATGGATGGTGCACAATTGGTTGACATGTTCCTTGATTCGGTTAGCACTTTCATAAATCTTTATTGTTTTAGATCATCTGTAGCGGCTGCACAACACTGCATAGCCGTTACAAACGGCTATAAAAAATGGACTGCTCTTTTTCCAACTATTGTTAAAACCGCTTATATGATACAAGTATTTGAGGCCGGTTTGCCAGAAAGCCGCGATGGAGCTATGCAATTGATGCATGCAAAAATGCACATTCTTTCGCCATTGATTCCAACTCGACACACTTCGTTCCTTCGTAGCTGTAAACAGATTGAAAAAGATGCATGGGTGATAACTGATGTGTCAACACAGTCAATCCGTTCTGTATTTGACGCATGTCTTCAAAATGTTTGGAAGTTTCCCTCCGGATGCATGATTCAAGAACTTACTAATAACTCCTGCAGGGTAACTTGGGTGGAACATATTCAAGTAGACGATAAGCGAACTACCGACACATTCTTCGAAAAACCAGTTTGTGGAAACAATGGATATAGAGCTGAAAGATGGCTTTTAACAATGGAAAGAATGTGTCAAAGAATTTCAACCTCTTTAGTTCCAAATACATCTGCCACTGACATCACCACAGGAGGGAAAAGGATTGTAATGAAACTTGCAGAACGAATGCTAAAAATCTTTTATGAAGCCTTGGATATGGCATCCAACACAGATTTTCCAAAGCTGAATACAATGGATAGTGATGGAGTTAGGGTCTGTGTTCGAAGGTGTACTGATCCGGGCACTGAAAATGGAGTCATCCTTACTGCGTCTCTCACCTTTTGGTTATCTTGCTCTCCGGATCATGCCTTTGATTTCTTCAAAGATAGTAGTAAAAGATTTCAGTGGGATGTTCTATGCGAAGGTTATCCGGCCGAAGAAATTCACCAGATAACATATGGAACCAATCCGGGAAACTTCACTTCAATTATCAAGACTTTAAATATGAAAGATGAAGATATGAGGATTCTGCAAGAGTGCTACACACATGCTATGGAATCTGGTTTGATTTATTGTCCGATTGATACAAATACAATGAATTGCGCGATAAGAGGAGAAGATTGCTCCATGTTGCCTCTTCTTCCGTCTGGTTTAACCATATCGGGGGATGGGCGACCTTCCGATCACAATATCGGGAAAGAAGTCGGTAAATGGTACGAAGGTTCGATTGTAACTCTAACTTATCAGATGCTGATTAGTAAAGATTCTGAAATGAGTCATCCTGACTTAAAGGTGTTGAAGAAGATAAACAAGCTTGTTAACTCGGCCGTGAACAAAATCAGAGATGCTTTGAACTGTAGTAGTGATTATTAG 1554 0.3977 METEKNMIMEIANNALEELTRLIKLNEPFWFRSTKTDRFVLQRETYEKMYKKSSVLNGPDARIEVSKESLVVSMDGAQLVDMFLDSVSTFINLYCFRSSVAAAQHCIAVTNGYKKWTALFPTIVKTAYMIQVFEAGLPESRDGAMQLMHAKMHILSPLIPTRHTSFLRSCKQIEKDAWVITDVSTQSIRSVFDACLQNVWKFPSGCMIQELTNNSCRVTWVEHIQVDDKRTTDTFFEKPVCGNNGYRAERWLLTMERMCQRISTSLVPNTSATDITTGGKRIVMKLAERMLKIFYEALDMASNTDFPKLNTMDSDGVRVCVRRCTDPGTENGVILTASLTFWLSCSPDHAFDFFKDSSKRFQWDVLCEGYPAEEIHQITYGTNPGNFTSIIKTLNMKDEDMRILQECYTHAMESGLIYCPIDTNTMNCAIRGEDCSMLPLLPSGLTISGDGRPSDHNIGKEVGKWYEGSIVTLTYQMLISKDSEMSHPDLKVLKKINKLVNSAVNKIRDALNCSSDY 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04713 517 ProSiteProfiles START domain profile. 1 264 IPR002913 GO:0008289
Vivi5g04713 517 Gene3D - 95 230 IPR023393 -
Vivi5g04713 517 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 4 512 IPR042160 -
Vivi5g04713 517 Pfam START domain 115 229 IPR002913 GO:0008289
Vivi5g04713 517 SUPERFAMILY Bet v1-like 286 509 - -
Vivi5g04713 517 SMART START_1 10 261 IPR002913 GO:0008289
Vivi5g04713 517 SUPERFAMILY Bet v1-like 3 227 - -
Vivi5g04713 517 CDD START_ArGLABRA2_like 5 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04713 Vivi-Chr5 145956004 145959189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04713 2 515 Homeobox Transcription Factor Family AT1G17920 34.221 3.71e-97 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04713 K09338 - psat:127108302 873.233