Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04709 ATGAACTCACTGGCACCATATTCAGTTGGGACCTGCCTCACCTCGTTGCAGCCCCAAAAACGCAACCATTATTCCAACTCACTAACAACAACATGTTCTATCCAAGTCCCTCAACCACCACCAGTCCTCGTACAAAAGGAGAATCAATTGAAGAGAAGAGATGCAATAGGCCTCTCCTTGAGTTTTGGCCTTCTTCATTCTTTATTACAACCCATAATACCAATTGCAACAGCAGCTTCTGAAGTAGCTCCATGTGAATTAACAGTAGCTCCTTCAGGCCTTTCCTTTTGTGATAAAGTTGTTGGCACTGGTACTCAGGCCGTTAAGGGACAGCTTATTAAGGCACATTATGTAGGGAGATTGGAGAATGGAAAAGTTTTCGACAGCAGTTACAATCGCGGCAAGCCACTTACATTTCGCGTCGGGGTTGGAGAGGTTATCAAAGGATGGGATGTAGGCATTTTAGGAGATGATGGAATTCCTCCAATGTTTGCAGGAGGTAAACGTACATTGAAGCTTCCTCCACAACTTGGATATGGTTCAAGAGGGGCTGGTTGTAAAGGAGGTTCATGTGTCATTCCTCCTGATTCTGTACTCATATTTGATGTGGAGTTTGTTAGCAAAGCATGA 630 0.4413 MNSLAPYSVGTCLTSLQPQKRNHYSNSLTTTCSIQVPQPPPVLVQKENQLKRRDAIGLSLSFGLLHSLLQPIIPIATAASEVAPCELTVAPSGLSFCDKVVGTGTQAVKGQLIKAHYVGRLENGKVFDSSYNRGKPLTFRVGVGEVIKGWDVGILGDDGIPPMFAGGKRTLKLPPQLGYGSRGAGCKGGSCVIPPDSVLIFDVEFVSKA 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04709 209 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 105 205 IPR001179 GO:0003755
Vivi5g04709 209 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC 79 208 IPR044183 GO:0009507
Vivi5g04709 209 SUPERFAMILY FKBP-like 87 207 - -
Vivi5g04709 209 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 110 209 IPR001179 GO:0003755
Vivi5g04709 209 Gene3D - 81 209 IPR046357 GO:0003755
Vivi5g04709 209 FunFam Peptidylprolyl isomerase 82 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04709 Vivi-Chr5 145919541 145920907 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04709 110 207 Calmodulin-binding Proteins AT5G48570 40.816 7.67e-17 76.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04709 5 145919541 145920907 Vivi5g04709 5 145919541 145920907 ECH